RNA id: TU40165



Basic Information


Item Value
RNA id TU40165
length 693
lncRNA type read_through
GC content 0.42
exon number 2
gene id G27121
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8471675 ~ 8505096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttttttttttttttttttttttttttttttttAGATTTGAACAggtttaaatttattaatttgatcttTTACACTCACATGATCAACACTTACAACATGATTCAGAAGAATGAATACActtgtatctctctctcttcaatCCCTTCTCCTCTTGACTTAAACAGAAAGACCCAAGAACGTTCCCTAATGAACTCACCCAATTATGTCTAGACAAGAGAGGTGTTGGTTCTTTCTTTATTGCCCACACAGAGCGACTAGGTTAACAAGTGCAAATGTGAAGAACCAGAGATGTTTCCCTTTGATCATTCtctttagaagaagaaaaattcCACATTTTGGATTATTACTGTGCCTACATTAACCACcacgaaaaaaagaaaaagaaaagagaaatacTTCAAAGCAACCGTGTCCAAAAGCAAGTGAGAAGAAAGGACAGACACCGAGTTAGAGAGTGTGTAAAGATACCCGGGGAGTGTGAGCGGAGTCAAGGGAAGGAGTGCACGGTGTCCCGCGGCTGGTCTACAGGTCCTTAAGGTCTTTCTGGATACCCCACAGAGTGTCTGCGCTCTTCTTCAGCTGAGAGATTTCTTCGTCGTTCAGGGTCATGTTGATGACGCTGCCCACTCCGCTGCTGTTCAGCACACAGGGCAGGCTGAGGTACACCTCCTCGCCGATACCGTACATGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250796.1 lncRNA upstream 94366 8374654 ~ 8377309 (+) True LOC122343529
TU40125 lncRNA upstream 140373 8278559 ~ 8331302 (+) False G27084
TU40126 lncRNA upstream 140373 8278559 ~ 8331302 (+) False G27084
TU40109 lncRNA upstream 172676 8225458 ~ 8298999 (+) True G27073
TU40122 lncRNA upstream 191939 8278559 ~ 8279736 (+) True G27084
TU40214 lncRNA downstream 247342 8752438 ~ 8752849 (+) True G27162
TU40250 lncRNA downstream 369621 8874717 ~ 8885145 (+) False ascl1a
TU40440 lncRNA downstream 447826 8952922 ~ 8953122 (+) True G27301
TU40508 lncRNA downstream 510759 9015855 ~ 9018331 (+) True washc3
TU40464 lncRNA downstream 533542 9038638 ~ 9134491 (+) False apaf1
XM_043236209.1 mRNA upstream 216830 8252084 ~ 8254845 (+) True si:dkeyp-38g8.5
XM_043236789.1 mRNA upstream 358766 8103345 ~ 8112909 (+) True copg2
XM_043237530.1 mRNA upstream 368871 8101251 ~ 8102804 (+) True ucn3l
XM_043237525.1 mRNA upstream 370926 8041437 ~ 8100749 (+) True col7a1l
XM_043236037.1 mRNA downstream 28720 8533816 ~ 8542787 (+) False etnk1
XM_043236035.1 mRNA downstream 28724 8533820 ~ 8548002 (+) True etnk1
XM_043237818.1 mRNA downstream 269192 8774288 ~ 8780078 (+) True dnai7
XM_043236795.1 mRNA downstream 299096 8804192 ~ 8815015 (+) False bcat1
XM_043236796.1 mRNA downstream 300595 8805691 ~ 8815015 (+) True bcat1
TU40115 other upstream 222452 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 333236 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 377174 8041432 ~ 8094501 (+) False col7a1l
XR_006250662.1 other upstream 913186 7532920 ~ 7558489 (+) False ube2h
XR_006250548.1 other downstream 28720 8533816 ~ 8542712 (+) False etnk1
TU40537 other downstream 663680 9168776 ~ 9182232 (+) False G27360
XR_006250785.1 other downstream 876446 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 1072219 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 1082223 9587319 ~ 9590318 (+) True G27490

Expression Profile