RNA id: XM_043238049.1


Basic Information

Item Value
RNA id XM_043238049.1
length 577
RNA type mRNA
GC content 0.38
exon number 3
gene id stmp1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8482890 ~ 8483831 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTATGTCACGCTGATGACATCTGAAGCTAGTTCAAGGCTAACCTCGTCAAAAGCAGAAACATACTAGATTTCGGGACCACTGTTACTgtcatttagcttttttttcaccGTTTCAAAGCTTTAATCATGATGCAATTCGTACTTGGCTTCACTCTGGGTAACGTGGTTGGCATGTATCTGGCACAGAATTACGAgGTACCcaatatttcaaagaaaatcgAGGCCTTTAAGAAGGACGTGGAGGCCAAGAAGAAGCCCCCAGAATGAAGGACGCAAGTCACGTGTGAAAATATGGCAAAGTGTAATAAATTGAAATGGGGGGgggatatttaaaaagaaaatatacacaaaatatacacaaaagaGCCCTCAAAGTGCACAGTGTATTCAGTATGGTGCCTCAGACTTGTTTTAAAGGTTGACCTGTTCTGCTTTTTGCATTGTATTCTGTTTCAATCTCTTTCTTTCCTAAATCAGGGTGAATATGTTCACGCCTGACAATTCGAAACAATGCAGTTTTATAAAGGCTTCTTAACATTATGTATTAAAGttatactaataaaatgtttgttttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250796.1 lncRNA upstream 105581 8374654 ~ 8377309 (+) True LOC122343529
TU40125 lncRNA upstream 151588 8278559 ~ 8331302 (+) False G27084
TU40126 lncRNA upstream 151588 8278559 ~ 8331302 (+) False G27084
TU40109 lncRNA upstream 183891 8225458 ~ 8298999 (+) True G27073
TU40170 lncRNA downstream 4155 8487986 ~ 8491938 (+) True spx
TU40214 lncRNA downstream 268607 8752438 ~ 8752849 (+) True G27162
TU40250 lncRNA downstream 390886 8874717 ~ 8885145 (+) False ascl1a
TU40440 lncRNA downstream 469091 8952922 ~ 8953122 (+) True G27301
TU40508 lncRNA downstream 532024 9015855 ~ 9018331 (+) True washc3
XM_043237679.1 mRNA upstream 237 8475706 ~ 8482653 (+) False tcp11l2
XM_043237680.1 mRNA upstream 237 8475728 ~ 8482653 (+) True tcp11l2
XM_043237933.1 mRNA upstream 8185 8460448 ~ 8474705 (+) True pkp2
XM_043236209.1 mRNA upstream 228045 8252084 ~ 8254845 (+) True si:dkeyp-38g8.5
XM_043236789.1 mRNA upstream 369981 8103345 ~ 8112909 (+) True copg2
XM_043238047.1 mRNA downstream 142 8483973 ~ 8487631 (+) True golt1ba
XM_043238048.1 mRNA downstream 142 8483973 ~ 8487631 (+) False golt1ba
XM_043238046.1 mRNA downstream 142 8483973 ~ 8486949 (+) False golt1ba
XM_043237150.1 mRNA downstream 4080 8487911 ~ 8490613 (+) False spx
XM_043237149.1 mRNA downstream 19035 8502866 ~ 8504047 (+) True kiss2
TU40115 other upstream 233667 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 344451 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 388389 8041432 ~ 8094501 (+) False col7a1l
XR_006250662.1 other upstream 924401 7532920 ~ 7558489 (+) False ube2h
XR_006250548.1 other downstream 49985 8533816 ~ 8542712 (+) False etnk1
TU40537 other downstream 684945 9168776 ~ 9182232 (+) False G27360
XR_006250785.1 other downstream 897711 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 1093484 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 1103488 9587319 ~ 9590318 (+) True G27490

Expression Profile