RNA id: TU40250


Basic Information

Item Value
RNA id TU40250
length 1180
lncRNA type sense_over
GC content 0.45
exon number 3
gene id ascl1a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8874717 ~ 8890176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATAACCatctttattgatttttttaagtaCACGTGACAATGCATGCATAACATCTCAGTCTTTAGCACAGCAACAGTTACATGATATATGTagcatgttaaaatgcattcgCCGTCTAGCAAAAACTTCTGCAAATATATTTCGTTACGTTTTAATCATTAAGCTTTGGCGTAACGGAGAACATAAAGGCACGTTTTGAACAAAAGCGGTTTCACGATGAAAATAATTCGTCCCCCAAAAGCGTTGGCTCAGCCTTTGATCCCGTGATGCGTTGATTGCGGCTTGTTTGGGAAAATTACAGCAACTCCGCGCCACGACGAGACGCGACAGCTGAAGCTAACGGAGGACGGTAGGCGATCTGTGTTTTGGTACGATTAAACCGCTcagaaaaatacaatacaatatataaaataaaaaatctgcgACAGCGGGCCTCATAACGCCCCAAGCGTTTCTGTATTTACACGCGATTTGTTTTGCATAGGTATTCTTTTTTCCCGCGTTATTTCGTTACGTGTCATTTAAATACGTGGCGGCTAAATATTTCCGAACTATAGTTAAATTTGTGCATAAATACGGTGTACATGCAATACATAATAACTAATTTAATACGCAGTATCATGCTCTCTCTATCGCCGTTTTGATTAGAAAAAGTACGAGCCGAAAAGACGACGCTTATTTGGCGTCTCTAGATTTTCTAGCATTTCCTCTTCGGTTTCCTTGAACGTCTCCCAGCGGCTCCCACTTCCTGCTTCAGAGAGAAGATGCAGGACACCACTCCTGTTTTGTTTAACGGTTCTTCCAGGTAGGATGAGGTCAGAGAGCCCTCTCCAGATCCCCGTTCATCGGTCTGAAACCCGCGTCCATTCTTGCTTCGCTCCTCAGGTGATGTCGACTCGCTGGATGCTTCTGTGCACTTTGTGCCCCCCCATCCGAAACTCGGGCCATTTAAAAGTACCACGTGACACCACACCCCCAGAGCCGTCCCGTGCGCGTGTCACGCTTGCCCACAAACCCCTGGGGTATCACATCTGGTTCGTGTTGTCCGGTAAGAAAGAGTTCCCGGGGGGGCCTCTGGGCTGAGAGCGGAGTTCAAAGTCAGCATTTCGTAACGATCTCTCAgccgttttgtttttcttcttactCGGTgtcgttaaaaaaaaatccctgttAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40214 lncRNA upstream 121868 8752438 ~ 8752849 (+) True G27162
TU40165 lncRNA upstream 369621 8471675 ~ 8505096 (+) True G27121
TU40170 lncRNA upstream 382779 8487986 ~ 8491938 (+) True spx
TU40166 lncRNA upstream 390903 8482896 ~ 8483814 (+) False stmp1
XR_006250796.1 lncRNA upstream 497408 8374654 ~ 8377309 (+) True LOC122343529
TU40440 lncRNA downstream 67777 8952922 ~ 8953122 (+) True G27301
TU40508 lncRNA downstream 130710 9015855 ~ 9018331 (+) True washc3
TU40464 lncRNA downstream 153493 9038638 ~ 9134491 (+) False apaf1
TU40515 lncRNA downstream 168876 9054021 ~ 9057297 (+) True G27345
TU40518 lncRNA downstream 172723 9057868 ~ 9058292 (+) True G27347
XM_043237546.1 mRNA upstream 8799 8855404 ~ 8865918 (+) False nup37
XM_043237548.1 mRNA upstream 8799 8855659 ~ 8865918 (+) False nup37
XM_043237545.1 mRNA upstream 8799 8855665 ~ 8865918 (+) True nup37
XM_043237547.1 mRNA upstream 8799 8855939 ~ 8865918 (+) False nup37
XM_043237549.1 mRNA upstream 31467 8841744 ~ 8843250 (+) True pmch
XM_043237976.1 mRNA downstream 68802 8953947 ~ 8961233 (+) True recql
XM_043237978.1 mRNA downstream 68802 8953947 ~ 8961233 (+) False recql
XM_043237979.1 mRNA downstream 68802 8953947 ~ 8961233 (+) False recql
XM_043237980.1 mRNA downstream 68802 8953947 ~ 8960655 (+) False recql
XM_043236012.1 mRNA downstream 77461 8962606 ~ 8969736 (+) True itfg2
XR_006250548.1 other upstream 332005 8533816 ~ 8542712 (+) False etnk1
TU40115 other upstream 625494 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 736278 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 780216 8041432 ~ 8094501 (+) False col7a1l
XR_006250664.1 other upstream 1316228 7532920 ~ 7558489 (+) False ube2h
TU40537 other downstream 283631 9168776 ~ 9182232 (+) False G27360
XR_006250785.1 other downstream 496397 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 692170 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 702174 9587319 ~ 9590318 (+) True G27490
TU40943 other downstream 1273014 10158159 ~ 10203768 (+) False G27629

Expression Profile