Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043236990.1 |
| length | 2277 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | ascl1a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056702.1 |
| NCBI id | CM032071.1 |
| chromosome length | 29200999 |
| location | 8874717 ~ 8890176 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0010629 | negative regulation of gene expression | biological_process |
| GO:0021575 | hindbrain morphogenesis | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0002070 | epithelial cell maturation | biological_process |
| GO:0043697 | cell dedifferentiation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0061549 | sympathetic ganglion development | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0045666 | positive regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0000989 | obsolete transcription factor activity, transcription factor binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU40214 | lncRNA | upstream | 132269 | 8752438 ~ 8752849 (+) | True | G27162 |
| TU40165 | lncRNA | upstream | 380022 | 8471675 ~ 8505096 (+) | True | G27121 |
| TU40170 | lncRNA | upstream | 393180 | 8487986 ~ 8491938 (+) | True | spx |
| TU40166 | lncRNA | upstream | 401304 | 8482896 ~ 8483814 (+) | False | stmp1 |
| XR_006250796.1 | lncRNA | upstream | 507809 | 8374654 ~ 8377309 (+) | True | LOC122343529 |
| TU40440 | lncRNA | downstream | 62746 | 8952922 ~ 8953122 (+) | True | G27301 |
| TU40508 | lncRNA | downstream | 125679 | 9015855 ~ 9018331 (+) | True | washc3 |
| TU40464 | lncRNA | downstream | 148462 | 9038638 ~ 9134491 (+) | False | apaf1 |
| TU40515 | lncRNA | downstream | 163845 | 9054021 ~ 9057297 (+) | True | G27345 |
| TU40518 | lncRNA | downstream | 167692 | 9057868 ~ 9058292 (+) | True | G27347 |
| XM_043237546.1 | mRNA | upstream | 19200 | 8855404 ~ 8865918 (+) | False | nup37 |
| XM_043237548.1 | mRNA | upstream | 19200 | 8855659 ~ 8865918 (+) | False | nup37 |
| XM_043237545.1 | mRNA | upstream | 19200 | 8855665 ~ 8865918 (+) | True | nup37 |
| XM_043237547.1 | mRNA | upstream | 19200 | 8855939 ~ 8865918 (+) | False | nup37 |
| XM_043237549.1 | mRNA | upstream | 41868 | 8841744 ~ 8843250 (+) | True | pmch |
| XM_043237976.1 | mRNA | downstream | 63771 | 8953947 ~ 8961233 (+) | True | recql |
| XM_043237978.1 | mRNA | downstream | 63771 | 8953947 ~ 8961233 (+) | False | recql |
| XM_043237979.1 | mRNA | downstream | 63771 | 8953947 ~ 8961233 (+) | False | recql |
| XM_043237980.1 | mRNA | downstream | 63771 | 8953947 ~ 8960655 (+) | False | recql |
| XM_043236012.1 | mRNA | downstream | 72430 | 8962606 ~ 8969736 (+) | True | itfg2 |
| XR_006250548.1 | other | upstream | 342406 | 8533816 ~ 8542712 (+) | False | etnk1 |
| TU40115 | other | upstream | 635895 | 8247912 ~ 8249223 (+) | True | G27079 |
| TU40013 | other | upstream | 746679 | 8137738 ~ 8138439 (+) | True | G26993 |
| XR_006250729.1 | other | upstream | 790617 | 8041432 ~ 8094501 (+) | False | col7a1l |
| XR_006250664.1 | other | upstream | 1326629 | 7532920 ~ 7558489 (+) | False | ube2h |
| TU40537 | other | downstream | 278600 | 9168776 ~ 9182232 (+) | False | G27360 |
| XR_006250785.1 | other | downstream | 491366 | 9381542 ~ 9394728 (+) | False | cfap54 |
| TU40764 | other | downstream | 687139 | 9577315 ~ 9578574 (+) | True | G27508 |
| TU40736 | other | downstream | 697143 | 9587319 ~ 9590318 (+) | True | G27490 |
| TU40943 | other | downstream | 1267983 | 10158159 ~ 10203768 (+) | False | G27629 |
