RNA id: TU40363


Basic Information

Item Value
RNA id TU40363
length 5022
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G27253
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8809767 ~ 8815012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatatattgttttttacatttattataatttcataaatCACATCACAAAATATTTAGAACATCACTAAAATACTTTGGCAATTGACAATAATAGTATTACATATGTCtaaatttctaatatttatttgtgcttttgtaACTGTTATAACTTTATTCCTAGCAACAAACGTCTACAAGAAAGGATGGTTCATTCGTACAAACatctttaaacaaatatatttttaggttcCCTTTGGGTGCAAAAAGGTTGTGCGCTTGGattggaaaaacaaacatctcaAAACCACTATTAATCAGCTGAAGGTAGACGTTACAACATTTTTTAGATCTTACACATAAACTTTAACACGTTCTTTTAAAACGTTCTAACATTAAACTGCACAggttaaaaaagtttttaaaaataaagttctaCCCACAACAACCTACTACGTTAAATATCTATAAATGTCTTTCATAGGTTTATGAGCTTGTGCATATTATTACCAGCATCAGTAATAACGTTACAGTTCCACTGAAAGTTGTACCTAAGTATACGTACTTCATATAACAGCAATATCAAGTAGTTAATGAAACAGCTGGTCACCAACTGTGATTAAAATAAGCTGTGACCATGAGGAGGCATCTGAGTGGTTCTGTGTGCTAAAGAGCAACATATTATTGCTAGACTAGGATTTAGTTAGCTGGTAAGAtttgtataaaacaaaacatacatgaaCGTGGCAAGCAATTATTCCATGGAGCcacaaataaagcttttttggTGCATGTTTAAATGTGTTGAAGAGCTCGTGTATGTTGACTCAGTGGAGGTGTCTTTATACGATCAAAGACCAGTCACTGGGGGTCCGTccatactaaaaaaaaaaaaaaaaaagcaaaaatgttacaaagatgaaatcaaaatgactcAATATGATTGTTCTGATTGGTGGTTTGGAATGGGAAGGTGGAGGTAAAACCCCATGTAAGAAATACAAAAAGGCAGTGGCTATTTGCTCTAAGTGCAAAAAACAATGGGctctatttacactaattgaaaacagcagcattatttaagtgcaaatggcattttctgctatttctGCTACTTACTCTGGCAGTATTGAGGTACATTCTAAAAGAGattattgagtgtaaatgttcattttaattcaaattattaaagagACGCCATGGTTGACACACCTACCTACCCTACCCAgtactttattttatactttttgatcaaaataaGAACTACATACGTCTGTACTGATAGCAGACTTCATGTAAATAGCCACTGCCAATAAGACAGGATATTTGAGCTTAGTGTaaataggcaaaaaaaaaaagcaaggtaaaaagaaaaatctgaattcTTCCGTTTTATCACATGAGGGCGCTATAGGACAATTTTTAGGCCCTCCTTTGTTGTCATAACCACATAAATCACCAAAACTCTTTTTGTCCAATCTCTAGTCACATTTTACTCTAAACACAAGTAGCACAACATCCATTTGTTGTAACCGTAGCATTAACACaattaatgttttcacaaaatattcaGTCATTTAACAAGTTTCTAAAATGCTTGAGTTTACCCCCTTACCAAAACCATGGAtctttcttatcatttttacaaatgattaAACTCAGCATGTCAGAAATGAAGACCTACTGTTCCAAAcctaaaatatagtataaagcGTCTAGTCCTGCAACATCAGCAGCTCAAAGGTATTGAGAAATatctctatataaaatattgcaacaaCTGATTCTCAGTTGATGGAATAGGCAGGTGTTGAAGCCCTTTTCATCAACAACATGGagtaaaaaagacatttttggatttttttttttttttttttttgtgatgtaatttgtgattttgtaatttttgttgatGACTGGCACCAGCTACCATCCATATCCAACCCATATATATTCCAATTAAATCTTTGCATAGGGGACCCCATTTTTCTATTGTACATTATATAAAGTAATGACTCATTCAGTTTTAGATGCTGTAGTATCTTGccaaaaatgaagattaaaTTGCAAACTAAGACTAAGTTTTCATATTGTCTCTAATATGCAGGTAGAACTGAAACATGGCAattcatgtgttttttgtaaagTCATCAACTGTTTTATCAGTCTATGTGGTATGAATGACtatatgtttctgttggaaaGAAAACTAGTGCTAATGTTTTGACTCGAATGACTCAAATTCTAATGCTGTGTTTCGATAAAGTTAgtatacaggtgctggtcatataattaaaaCCTCACCaaagatttatttcactaattccattcaaaaagtgtgtattatattaattcattacacacagactgatatatttcaagtgtttatttcctttattttgatgattataactgacaactagtGAAAACCCAAAATTGAGGGGTCTTTCTGAGTGTCTCAGAAGattagaatattgtgaaaaggttcaatattgaAGCCACCTGGTGCCACGCTCTAATCAGCTAATtgactcaaaacacctgcaaaagtGTGTCGTTTATCTGGTGTTTTACCTGAATATCTGTGAGCTCTTTTAGCAGCCTGGAGGCAAGCGGAGGAAAACCTCCTTCGCATGGAATATGTAGATTCTGTACAGCAAAAGATtagagtaagaaaaaaaaaaaacgttgttaaaaaatgttgaaaatttgTTAAGCTCCAAACAAATCGGCCAAGATGCTGACTGATATCtgttctaaaatgtaaaatccaGTATGTTTTGATACTGAACCGGTGTGCAGTGCTCTAACCGtccaaaacaaactaaactcaCCTCTCCCTGATACAAGATCCTGCCAACTGGACTAACAACGCAAGCGGTTCCAGAACCAAACATCTCCTTCACTCGCTTGTCCTCCAGAGCCTGCCGCAGGTCGGCCATGGTCAGATACCGCTCGGATACTTGGAACTCACCCTGTTAGATGTAATCAAACTTTGAACCCAACACTCTCACgacaaatgtgtaaaaaatgcCCTTAAAATAGATACATTTCTGCCATATTTATCCCTGAAAGTTTCATAGTAGTATCTCAAAGGGATTGTTcgtccaaaaaagaaaattctgctGTAATGCACTCATATCACTCCATACCTGCATGACTCTTgttcttctgtggaaaacaaaaagtCAATTGGAGCTGAAGATGTTTACTTACTTCAAAATATCCTCTTTGTGTTCCACAATACAAAGAGAGTCATACAGGCTGTGGAACAAATAGGGTGAAAGTGGCACGCTGTTGTACCCATAAAGataattatttgcatgtttttcctgaaaaaaaaaaggttttagacGGGTTTTACCCATTTGTGAGCAAGTTCTAGGATGCTTTGTCGTGTAACGCCCGGCAAAATAATGCCATCTAGAGGTGGTGTTGCAAGCTCCTCctctggaaagaaaaaaaacaattcaataccatttcaataaaaaatatgataataaaagCCCACTACAGGTCTGTAGTAGAAAAGCTTATGTCCActatggaataaaaaataaataaaaaggttttggtccaaaacaaaaatacgcTCTAGACATGCAgaatatttgaatgtgtttacATCCTTTCTGAAAACTCTCAGACTTTTTTAGACTTGCTTATCTGTTATTTATAAGGTGTTGGGGGTATTGTTTTTCACTTTGTTTCCGAGGTGTTTTACTTTGACCTCCATAACCTTTGACTTTCACATAATCTGCATTTTCTGTTAAAGTAAATATGCATAACCAAAATACTTTATCTATCAAAACACGAGCGAAAGTATCTTTTTACAAGCGTAAACGGCAGTCACCTCCTTTCTCATTGATCCAGTGAACGAAAAGGTTCATGGTGCCGACCTCTGTTATCTGATGGTTGTCCCCGTACAGCCACAGAACCTGCTGGCAGCCGTAATCCACCGCCTCATACTGGGCATAGATAGATGCGCCATAGTTCCTAAAAAAAACAGAGATTCGACACATTGTATCTTCGTCACAATCAAAGATCTGTCTTAGCCCTGAAAACCCCCATTGTCCTGTGTCATTATCATTCCTTCTGAAATTGATTCATTCTGCATTCAGCCCTGCGTATAACTCTGCTCTCATGTGATTTTAAGCAAGATCGCGCAGATTTAAAACATGGCCGTTAGCACGCGCAAATCCGAACATGTTACTATGAGGCTTTGGCATTAAACCAAGCTCGCACACATTTGGATCGGGGCTAAGAATGTGGCAACAATGCTCCTCATTCATTCAGCTTTTTGTAGTAAAATATAGAAATCTCTCTCgttcattcactcaccctccCATCTTGCAGTCTCCTGTACCTCCTCTCCAAGCTCTGATGTATTTGGAGTCGGCCCACAGAGACACTGGTTTAGCACCCGTGCTGAAGTATGAGCCCACAGGGCTGAGGATGACGAAAAGCATTGCCTTGTTGGGCTTCTTGACACCAAGGGTGGGCTGATCACGCAggcCTCTGTGCCCAGGAAGGTGGGACGGATGTACAAACTGGCAGAGTCTGAGTGAGGAACCCAATCCTGATCAACCTCCACCAGCTTCCTGATGCACTCCAGTAACTCTGCACAATCAAAACTCTACACAAGAACCAGAAAACGAGAAACAGAGGTATAGTTTTGTGTCTGCATCTAGACTAGAATGTGGATGCATTAAAGAGGTGAGAAACATCAGTCTTACAGGCAGACAGGCCCTGTGGGCGGACTTCAGCATCCGCTTCATGTTTATCATGGGTCTGAAAAGACGCACTTTGTTATCTGGGCCCCGGTACGCCTTCATACCCTCAAGACCTGTACAGCGTAATGCAGGGCAGAACAGCCTGGGTGTACGGACAGGTTCCCAAAAGGCTTGATGTGCGGCTCCTGCCAGCCTTCCTCAAGACTCCACTCAATGGTCAACATGTGGTCGGTAAAGACTGTCCCAAACACCAGGCCATTCGGTTCAGGTTTTGGCTTTTGGTTCTGTACTAACTGTATCACCGTGTCTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40372 lncRNA downstream 583 8805244 ~ 8809184 (-) True G27257
TU40386 lncRNA downstream 4537 8804155 ~ 8805230 (-) True G27263
XR_006250765.1 lncRNA downstream 35596 8762099 ~ 8774171 (-) True LOC122343385
TU40347 lncRNA downstream 273091 8533831 ~ 8536676 (-) True G27249
TU40343 lncRNA downstream 292365 8516294 ~ 8517402 (-) False slc25a3a
TU40401 lncRNA upstream 55479 8870491 ~ 8871056 (-) False th2
TU40406 lncRNA upstream 72174 8887186 ~ 8887953 (-) True G27279
TU40451 lncRNA upstream 145434 8960446 ~ 8961433 (-) True G27306
TU40633 lncRNA upstream 188911 9003923 ~ 9004223 (-) True G27417
TU40644 lncRNA upstream 208865 9023877 ~ 9024077 (-) True G27425
XM_043237815.1 mRNA downstream 5927 8780290 ~ 8803840 (-) False LOC122343383
XM_043237817.1 mRNA downstream 5927 8780290 ~ 8803840 (-) False LOC122343383
XM_043237813.1 mRNA downstream 5928 8780290 ~ 8803839 (-) False LOC122343383
XM_043237816.1 mRNA downstream 5928 8780290 ~ 8803839 (-) False LOC122343383
XM_043237811.1 mRNA downstream 5928 8780290 ~ 8803839 (-) True LOC122343383
XM_043237544.1 mRNA upstream 28195 8843207 ~ 8857050 (-) True LOC122343226
XM_043237543.1 mRNA upstream 28195 8843207 ~ 8855299 (-) False LOC122343226
XM_043236988.1 mRNA upstream 55203 8870215 ~ 8874598 (-) True th2
XM_043236987.1 mRNA upstream 59700 8874712 ~ 8885016 (-) True pah
XM_043237952.1 mRNA upstream 77007 8892019 ~ 8941271 (-) True LOC122343470
TU40311 other downstream 341739 8460506 ~ 8468028 (-) True G27232
TU40263 other downstream 560542 8247911 ~ 8249225 (-) False LOC122343432
TU39958 other downstream 1251314 7555115 ~ 7558453 (-) True G26951
TU39663 other downstream 2070172 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 2448324 6350503 ~ 6361443 (-) True msrb3
XR_006250786.1 other upstream 79172 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 80780 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other upstream 80780 8895792 ~ 8941271 (-) False LOC122343470
XR_006250745.1 other upstream 189248 9004260 ~ 9009304 (-) False klhl42
XR_006250565.1 other upstream 456960 9271972 ~ 9300179 (-) False uhrf1bp1l

Expression Profile