RNA id: TU40535


Basic Information

Item Value
RNA id TU40535
length 2394
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G27360
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9163147 ~ 9227212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGCAGCAGGCGAATAGCCTGAAGAAGCCGCTGTCTGTGGGCAGAGTTTAAAATCCCGATCTCTAGCAGGTCCTGGTCCTCCACAACATTACTAccctaCATGAACTGAACGTTGTCGAAGCCGTTAGACAGCAGGTGGTTTTCGTACTGCACGAGACCGATGTTGTCCAGCCACTGTCCCACGGACTGGACGGGGCAGCGGGGGCCTATCAAGGGGTGCAGAGGGAGGCGTTTGAGAAGTGAGTAGCCATCCACCCGGTAGCAGCGACAGTCCGGCTGCGAGAGCTGGCACTGCCACATCATGTTCCTTGCAAAGTGACTGTCAAACGAACCCGCCATGCTCAACAAGCCACGGAGAGCGCGAGTGGAAGCggggagagacagaaagagcgAGAAAAAGGAGGTAGGAAAGTGATTTCAagccacagaagaaagtaatgTTCAGAAAGCAGCCAAGAGAGGGAGgaaagcagaaagagagagcaaatTAGAAGAAGAGGTCCTCTCAGGAGAGCGAGCGTTAGGGTCCGTGCTGGTGGAGAAACACGCCGGCTGTGGAGGTAGACATGCTGAAGGCTCCAAATTACATCCACAAGAGAGAGATGCGCATTACCGACTCTGTGCTGCTCAACCTGTGTCTCAACGTGTGGAGAGTGCaggcatgtgcgtgtgtgtgtgtgcgcgtgcgggAGGCAACGAGCGAGTGTGCGCGAAAGAGGATAGGAATGACAGCGTGCAGCTTGCTTGGTAGATTTCTGTTTCTCCAGCACTCCCACACTCATTTGTATGCCTCTGCATCCTGTGCCACTGtgcgctctctctccctccctctcggTCTCTCAGGCTCCCTCCCTTCTTTCCACTAGCTGTACCTCACATTGCCGATAATAGCCATCAGATCAACCCCAGCCTCTTTGTCTGAGTGCAGAAGCTGCTGTTGCTCcctcccacacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacactcacacactcacacacactcacacacactcaaacacactcaaacacacacacacacacacacactctgtgggCGTCTGTGAGCACTGGTGGAATGGCAACACAAATGGGCTTTCTGTGGACGGGAAAAAATGAGGGACCActgcagaggagaggagaggcaAAAGTAAAGGAGAGGTgaggaaaggaaaggagaaaagGAGGTGAAAGAAGGGGTGAAGGGAGGAAACGGGAAGGCAAAGGCAAAACAATAAGAAGCGAGATAAAAGGTGACAATTGagaggagaaacagagagagaggaggagaggtaAAGTGAAGGCAGTGAATGAAATGGTGCAGAGTTGAGTGAAAGTGATGAAAGTGGAGATAAGAGGACAGGTGAGGGGAGATTAAAGGAGAGAAGGTGAAATGAGAGGGAGAGGACAGGAAAAGTGAAAGATGAAGAGAAAGTAGAGGAGAGCAATATTAGGTGGTGCAAATGAGAGGAGAGGCAAACAGTGCAAGGGACAGGTGAAATGAgcaggagaggagaggagaggagaggagaaagtAGGCAAAAGTTATAATAGAAGAAGAGAAAGCATTAGGTAAGAGGTTGGAGAGGGGACAGAAGATGAAAGGAGAGGCAAagagaagtgagagaaaacaatGAGAGGAGGCAACAGAAGACCAATGGGAGCATACAGAggaaagaaggagagagaaaaggaggtaagaaaagaagagaggaaGGGATGGGAGAAACAAAAGAAGAGTCAAAGGGATAGGGgagaggaggtgagaggaagaggaagacgtGAGATGAGAAAATGAGAGGAGGCAAAACAGGAGGAGAAAGGACTGAAGATGAGTGTAGAAGATATGAGGCAAGAGGACAGGAAACAGAAGACAGTGCTGTTGTATTCATTACTTGCTCAAGCGATTTGATTTTCGCTATTGATCATCGCTGAGGCACTCTTAGTACACTGATCTCCAGACAATTGCTCGCGCTGTCCCAAGACTTGTGCTCAGAGTCTAAACTGTCCATCCACTTCCTGTCCCCCTGCTCTCATTATGACTACAGGAAGAGCACAGTGACGAGAGGAGAGCGCACGGTAACCATGGTTACATCTCAAAAAGCTCCCTGTCTATGAGCGGGTCTTTGACACTACTGAAGGAAACCCTCCTGTCTCACAGTGCTGCACACTTCACAGCcgttatttaatattcatatcaTGCCGTGAGCTCCCTATAGTTATGAATATACGTTAAATGTAGAGGGATGACTGACTATATGCGtcaacaccacacacacacagagacacacaaacctGAGTGATCCTCCGTAATCCCCTCCAACTCTGTGCCAATTCCAGCACCTATGGAGCTCATAATCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40464 lncRNA upstream 34285 9038638 ~ 9134491 (+) False apaf1
XR_006250734.1 lncRNA upstream 69798 9088755 ~ 9098978 (+) True LOC122343257
XR_006250634.1 lncRNA upstream 86910 9078018 ~ 9081866 (+) True LOC122342713
TU40527 lncRNA upstream 92640 9068931 ~ 9076136 (+) True G27352
TU40518 lncRNA upstream 110484 9057868 ~ 9058292 (+) True G27347
XR_006250779.1 lncRNA downstream 168578 9347227 ~ 9349824 (+) True LOC122343448
TU40575 lncRNA downstream 170349 9348998 ~ 9351206 (+) False LOC122343448
TU40592 lncRNA downstream 177717 9356366 ~ 9356870 (+) True G27397
TU40607 lncRNA downstream 306644 9485293 ~ 9485655 (+) True G27404
TU40608 lncRNA downstream 308712 9487361 ~ 9487576 (+) True G27405
XM_043237062.1 mRNA upstream 35188 9107149 ~ 9133588 (+) True apaf1
XM_043237063.1 mRNA upstream 35188 9107425 ~ 9133588 (+) False apaf1
XM_043237064.1 mRNA upstream 35188 9109037 ~ 9133588 (+) False apaf1
XM_043236749.1 mRNA upstream 126920 9024477 ~ 9041856 (+) True gnptab
XM_043237138.1 mRNA upstream 150443 9015841 ~ 9018333 (+) False washc3
XM_043237909.1 mRNA downstream 138931 9317580 ~ 9323622 (+) True LOC122343441
XM_043237906.1 mRNA downstream 146251 9324900 ~ 9333048 (+) True LOC122343440
XM_043237907.1 mRNA downstream 146251 9324900 ~ 9332251 (+) False LOC122343440
XM_043237914.1 mRNA downstream 177318 9355967 ~ 9373818 (+) False ncaph2
XM_043237913.1 mRNA downstream 187858 9366507 ~ 9373818 (+) True ncaph2
XR_006250548.1 other upstream 626064 8533816 ~ 8542712 (+) False etnk1
TU40115 other upstream 919553 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 1030337 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 1074275 8041432 ~ 8094501 (+) False col7a1l
XR_006250664.1 other upstream 1610287 7532920 ~ 7558489 (+) False ube2h
XR_006250785.1 other downstream 202893 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 398666 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 408670 9587319 ~ 9590318 (+) True G27490
TU40943 other downstream 979510 10158159 ~ 10203768 (+) False G27629
TU40942 other downstream 1019997 10198646 ~ 10203768 (+) True G27629

Expression Profile