RNA id: TU40736


Basic Information

Item Value
RNA id TU40736
length 2905
RNA type TUCP
GC content 0.39
exon number 2
gene id G27490
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9587319 ~ 9590318 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcacatgtatttttttattgtagtatttttataaacttgaTTACATTATCCGTTAACAAAATAATTGATATTACATAGGctagaaacattttacatttgtgcaATTTCATAATATATCGTTTAAATGCGATTTAAAAACcattcaataataatatttaaattaaatgacaacACGCCTGCTTGTCTAACTAAATTGTCAAATTACATTTCTAggcaatcattttaaatgatccgTCCGTCTCCGACCTTTCACCAACTACATTTGTCTGCCATTAAATAACATCCGTCTAATCTTGTGGCACGTAGGCTGCATAACAGGTCTGTGTGTTTATTCTGAATGAACTGTAAAGTGAATCATGTTGCTAAATGAGGGTGTATTCAGAAGTGATGTAAGGTCTGTAATCACAGGTCAGACCACAGACGGCATCTGAACATATCATCAATGGATAAAGCACTGGACTACATGTATAACAAGGCCGTCTGCAGAAAAGCATATCACTGAAACCCACCCATTAAGTTTGTGAGAAGTGAAAGAAGCCGGTCACCCTgttccttttccttttcctttacGCACCAAACCCCAGATTGGATTCTTCTCCATCACCCGATTCGGTCTTAAAGCGATACCGACACCTTTGCAGCAAACGTGCCGCCGTGGCAGAGACTGACTTGAACGGTTtcgttgggtttttttttatttgactgacAGAAAACGCTGAAACAATACACAAAACATTCAAGTGGCAAAACTGGCTTCTTGGGAGCCCTTGCATGGCAATCCAATTTATTAAACTACAGATGCTCGGTTATACAAAATTGCACCACTTTTAATTAAGGCTTTTAAGTTGACACATGGCCACCACCCCCCCACCCACCTCCGACCCATCAGAAGCGGACGATGTTGCGTTTTAAAATACTGTGCCTCCGTCTCAGTCCTGGTCCTCACGTCAAGTTTCTATTTTCTTTAGTTCCCCCTTCCCCCTCCAATCCTAAAAAGCATCAAGGCATTTGCTTGCAGAAGGATAACGCGACTCTTTGTGGTCGGCCGCTGCTCGGACGCTCCCTGGGAGTCGCGTTCTTCACTTTACACAGTGCAAATCCTCAAAGCATTCATAAACAATTCATCACGCGTACATACGGCATGCTGCACCCCGCAAAGAGGCGTTTCGATGTCCGACAAGACCGGTATCGAACGCTACAACTGCGCATTCGGCTCTTTTTTACGAACGCTCTTTGCGTTTGCACTCGATGCACgattaattcttttaaaattttgcaAAATCGATTCTTcccgttttttgttttttttgttttttttttcaccctcgcTTAACACAAAGCCCCCACATTCAGTTAATCCAACAGACAGAAAACAGGGAAAATTATTACAAAGTCGAAAACAGTCACTAACAGACATCTTTTCCTCGTTCTTTACTGACAGGATCCGATATTTGGTTTTTCATATCCTCAGTTTACACCAGATGAATCAGCAAGCAAGGGGAGATGGGCAACGGTTTGTTGTACGTTTGGTTTTTCCTGCGTATTAAAAACCccaattctttaaaatatatactgcgtTTATGACCTACATTTGATCAGGATCAGCTTGGTCAAGACCGATTGGACCGTTTATTACGAGACCACCCGAAAGATGAGCTTCAGAGGGATACTAAAACTGAACCGTCCAACCCATTTTTTAATACCCCCTTTTTGAAAAAAGCCTGCTGTACAAAGTTCTTTgtgaacaaaacaaagaaacccGGCGTGGAGTATGAGATGGACCTAAGATCATGTAAATTAatcttcagaagaaaaaaaaaaaaaagagagagagagacaaaaaaaaggtcttAACACGTATTCGAAGGCAACATCTGAGGCTAAGGACAATGATagtgacaggaaaaaaaattatattttttttaactttttacacGTACATGTATCCACAGGTTTCTTCCTAAAACTCATCAAACAGTTGTGAATATGCATTTCCATAGAGCAAAAAAATCTAGTAATTttataaaagagagagaaaaaaaaaaaaaaaaaaaaaaaggcagaagaTAAAGAAATCATGTTtagaataaaagcaaaacaaaagttacaaaatgttcatcaaaaaaaaaaaaaaaaaaatacaaaagaagtGAACGTTAGCTGTAATGGTTTATATAGGAGCTCTTTGGACTTCCTCTCCTCTCTGGCTAAAATAGTGGTGATTATAAATATCATTGTAATTGCCATGGCAACGTGCACAGCCTGGTTAGACATTCCCTCCTTACATTTACAACAGTGGCCGTCTCCGTTAGCAATAACACTGCGTGTAGgctctggattttttttaaaattctttttgtCTAGCTCTGTATTTAATCGTTTTATTCAGTTGCATacttaatacataatatatatttatatatatttatatgtaaaaatctCTTTCTCGCGACATTGGAAAGTGATGATGGTTATCTATGTGCAAAAAACTGTCATGGTACTGTAGCCTTGAATccgttggttggttggttgttGGTTGGTTTGTTAAAGGGGCATCACCACATAGGAAAGTCCATTCGATGTTAGGTTTTAGTAACGTCGGAATGCTGGCACTGCTGAAAGACACAGCAGTAAATCAGACCTCAGAGCAAAAGAACAGCTGTATATTAGAGGAGCTGGCAGGTGGACTTTTTGCGTGCCTTTCCAGGTACGGGAGTTTTCCTGTTGATTTGCCGGACCAGGTCATAGAagatctgcacacacacacacacacacacacctctcactgAATACAGACCAGATGCGTTTGCCTCAGAATTCATCTAGTGTCACTACGGCTCCAAAACCGTTTTGTAGATTGAAGATGAAATTGCTGAGGTATTTGCTAATCAtatacaaaacagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40761 lncRNA upstream 30601 9554960 ~ 9556718 (+) True LOC122342620
XR_006250619.1 lncRNA upstream 31102 9554973 ~ 9556217 (+) False LOC122342620
TU40744 lncRNA upstream 50232 9536610 ~ 9537087 (+) True G27498
TU40618 lncRNA upstream 79391 9504080 ~ 9507928 (+) True wnt7ba
TU40610 lncRNA upstream 91666 9495434 ~ 9495653 (+) True G27407
XR_006250603.1 lncRNA downstream 70169 9660487 ~ 9673677 (+) True LOC122342587
TU40854 lncRNA downstream 96181 9686499 ~ 9872003 (+) True G27562
TU40944 lncRNA downstream 567841 10158159 ~ 10257553 (+) False G27629
TU40958 lncRNA downstream 672551 10262869 ~ 10264200 (+) True G27643
TU40968 lncRNA downstream 697160 10287478 ~ 10365571 (+) True G27651
XM_043238006.1 mRNA upstream 2807 9581569 ~ 9584512 (+) True bik
XM_043238007.1 mRNA upstream 2807 9581570 ~ 9584512 (+) False bik
XM_043236981.1 mRNA upstream 10358 9556829 ~ 9576961 (+) True slc26a3.2
XM_043236575.1 mRNA upstream 32759 9545685 ~ 9554560 (+) False slc26a4
XM_043236573.1 mRNA upstream 32759 9545687 ~ 9554560 (+) True slc26a4
XM_043236521.1 mRNA downstream 50930 9641248 ~ 9654380 (+) True impdh1b
XM_043236522.1 mRNA downstream 50937 9641255 ~ 9654380 (+) False impdh1b
XM_043236524.1 mRNA downstream 53144 9643462 ~ 9654380 (+) False impdh1b
XM_043236527.1 mRNA downstream 53145 9643463 ~ 9654380 (+) False impdh1b
XM_043236523.1 mRNA downstream 54307 9644625 ~ 9654380 (+) False impdh1b
TU40764 other upstream 8745 9577315 ~ 9578574 (+) True G27508
XR_006250785.1 other upstream 192591 9381542 ~ 9394728 (+) False cfap54
TU40537 other upstream 405087 9168776 ~ 9182232 (+) False G27360
XR_006250548.1 other upstream 1044607 8533816 ~ 8542712 (+) False etnk1
TU40115 other upstream 1338096 8247912 ~ 8249223 (+) True G27079
TU40943 other downstream 567841 10158159 ~ 10203768 (+) False G27629
TU40942 other downstream 608328 10198646 ~ 10203768 (+) True G27629
TU40966 other downstream 775434 10365752 ~ 10367912 (+) False lamtor4
TU41104 other downstream 1109228 10699546 ~ 10700125 (+) False zmp:0000000650
TU41106 other downstream 1117321 10707639 ~ 10708872 (+) False LOC122342850

Expression Profile