RNA id: XM_043236984.1


Basic Information

Item Value
RNA id XM_043236984.1
length 4288
RNA type mRNA
GC content 0.46
exon number 20
gene id zmp:0000000650
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10686097 ~ 10702203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATGAGCATTTTGTAAGATGGGTCGATAGTGGATGATTGTCGCCGACAGTCAAACGATTCTGGGGATATAGCAGTCGGCTCAACAACTTTTGGCAGGTTGCAGCGCATGCAAGCACATGCATATAAACAAACCAGTCTAAACACAGCAGCGTCCGGTCTGAAAGCGTTTGTGTCGCAACTGGCAACTTTCCCTCTTcaccaatattaaaaaaacaatttaaaggtttttttttaatctatctCTTCTGGTCTGACCATCTTTTAAAGGCAAGATGAGCACAGCTgagaaaatttgtatttttatctttcTGTTACAAGGTGTTTGTTGTAAAGATTTCAGCATCAGTCTGTCAGAGAAGATTGAAGCTCTCAGTGGATCCTGTGTGATCATAAACTGCTCTTTTGAGATTGAAGACTATTATGATCAATTCCTCAATGAGACGGATGCTACAGGAGTTTGGCTCAAAGATGGGACACATGCAGATATCAATCAAGTGTTTAACTCCAGAAATCCCAAACCTGGTCACTTGAGTGGAAAAATAACTGGAAATCTACACGAAAAGAACTGCACAACTATCTTTTATGATGTTAGTTCAAGAGACAGTGGAAGTTATTACTTCAGGATTATGAGTGGTAAAGGTCTGAGTTACAACTATATACATCACTTCTCCACTATAAATGTCATTGAGTCTCCTCCTAAACCCAGAGTGCAGCTGTATGTGGATGAGGAGAAGAGGCAGGATCAGGAGGAGGTGTTGGAGGGGAGCTCTGTGAGTCTGCGCTGCTCTGCTGAGACTCTCTGCTCCTCTTCTCCAGCGACTCTCACATGGAGCTCCACTCCCAGAATCCCCCTCAATGACAGCAGCAGACTACAGGAGCTCATCTCTGATCTCAAGTTCACTGCTACTCACCGAGAGCACAGAGTCACTTTCACCTGCACTATAACCTACCAGATACAGGACCAGAACAAAACAGCTCAGGACAGCATCACGCTACTCGTTCAGTatTCTCCTAAAGACACATCAGTGTCTGTGTTTCCCTCCAGCTCTGTGTTGGAGGGCAGTTCAGTGACTCTGTCCTGCAGCAGTGAATCAAATCCAGCAGTGATGAACTACACCTggtccagagagagagaaggacagTTGGAGCAGCTGCAGACGGGACAAAATCTTACCTTCAATAGGACCGACCCGACACACAGAGGCTGGTACCACTGTACAGCTCAGAACCAACATGGAGCCCAAAACTCATCTGTGATGCTGGACATTCAGTatgCTCCTCAGATCTCCACTTCCTCCAGCTGTATTAGTGGAGATGTAacggtgtgtttgtgtgaggcTGATGGGAATCCCTCTCCTGAACTGGAGTGGCATCTGTCTGGACGTCCTGTCACTAACTCTTCAAACAAGTTCATCAGTGAAGAGCGATTGAGCAGCACAGGCTTGAGGAGCTCCATCACTCTCCATCAgtctctcacaaacacatccaCTCTGCTGTGTGTCAGCAGAAACACTCGAGGATCTGATAAACAACTGTTTCACGTGGTTTTCATTACTCAAAAAGCTCCAGgtttttaCATGTATCCCCTCCTGATTGGGATCTCAGTTGGAACTGTGTTTATGGCAATCTTATGGGTCACAACACTTCTGTACACATGGTTATGCAGAACCCAAACTGGAGGTAAAGCTGGACTGATCCAGACTGATGGGGCTGATTCGGGGGACAGTAGGGGAGAGCCTTTTTATGCCAATAAAGTTGTGTTGTCCTCAGCTGAAGACCCAGCGCTAAATCATCCAGAACCCCTACATTATTCAACAATTAACTTTACAAGCACCAGTCCGGAGGCAAACGGCATCAGAGGCATCTCTTCTCTTACTAGCGATTACGCCGTGGTCCGATATTGTGGTCAAAATGTAAAAGGTAGCGAGGAGAAGAACGGCTGGGTTTCCTCGGTGCCACACGGTGAAGACCTTTACCAGGTTCCTCGCAAAGCAGCTGCCGAAGTAAAACAGGAGGGTCAGGGCCACCAGTggtttctttccttcatccggGACATTGTACTGATTATGGCCGATGGTCTATGTTTCTCGttgaatgaaagaatgaacATCTGGACAGCAGAGAAAATTATTCTTCTCAGTTTTATTCTAAAAGgtgTTTGTTGTAAAGATTTCAGCATCAGTCTGTCAGAGAAGATTGAAGCTCTCAGTGGATCCTGTGTGATCATAAACTGCTCTTTTGAGATTAGAGACGATTATGATCAATTCCTCACTGAGAAAGCTGCTACAGGAATTTGGCTCAAAGATGGGACACATCTAGATAACAATCAAGTGTTTAACTCCATAAATCCCAAACCTGGTCACTTGAATGGAAAAATAACTGGAAATCTACACGAAAAGAACTGCACAACTATCTTTTATAATGTTAGTTCAAGAGACAGTGGAAGTTATTACTTCAGGATTATGAGTGGTAAAGGTCTGAGTTACAACTATATACATCACTTCTCTACTATAAATGTCATTGAGTCTCCTCCTAAACCCAGAGTGCAGCTGTATGTGGATGAGGAGAAGAGGCAGGATCAGGAGGAGGTGTTGGAGGGGAGCTCTGTGAGTCTGCGCTGCTCTGCTGAGACTCTCTGCTCCTCTTCTCCAGCGACTCTCACATGGAGCTCCACTCCCAGAATCCCCCTCAATGACAGCAGCAGACTACAGGAGCTCATCTCTGATCTCAAGTTCACTGCTACTCACCGAGAGCACAGAGTCACTTTCACCTGCACTATAACCTACCAGATACAGGACCAGAACAAAACAGCTCAGGACAGCATCACGCTACACGTTCAGTatCCTCCTAAAGACACATCAGTGTCTGTGTTTCCCTCCAGCTCTGTGTTGGAGGGCAGTTCAGTGACTCTGTCCTGCAGCAGTGAATCAAATCCAGCAGTGATGAACTACACCTggtccagagagagagaaggacagTTGGAGCAGCTGCAGACGGGACAAAATCTTACCTTCAATAGGGCCGACCCGACACACAGAGGCTGGTACCACTGTACAGCTCAGAACCAACATGGAGCCCAAAACTCATCTGTGATGCTGGACATTCAGTatgCCCCCCAAAACATGTCAACTTTAGCAATTCCCTCCAGCTCTGTGTTGGAGGGCAGTTCAGTGACTCTGTCCTGCAGCAGTGAATCAAATCCAGCAGTGATGAACTACACCTggtccagagagagagaaggacagTTGGAGCAGCTGCAGACGGGACAAAATCTTACCTTCAATAGGACCGACCCGACACACAGAGGCTGGTACCACTGTACAGCTCAGAACCAACATGGAGCCCAAAACTCATCTGTGATGCTGGACATTCAGTatgCTCCTCAGATCTCCACTTCCTCCAGCTGTATTAGTGGAGATGTAacggtgtgtttgtgtgaggcTGATGGGAATCCCTCTCCTGAACTGGAGTGGCATCTGTCTGGACGTCCTGTCACTAACTCTTCAAACAGGTTCATCAGTGAAGAGCGATTGAGCAGCACAGGCTTGAGGAGCTCCATCACTCTCCATCAgtctctcacaaacacatccaCTCTGCTGTGTGTCAGCAGAAACACTCGAGGATCCGAAAAACAACTGTTTCCTTTGCTTCAGAAGTCAGgtttccatcatttgtcttttttggtTGGAGCAGCTGGTGGGGCTACTGTGATGATGATCTTGTGTggcattttatttatctgtgcAAGAAGAGAAAGCAACACAAGACGAGACGGACTCATTCTGACTGACTTGGAGGATGAGCGTGACCCTGTTTATGCCAATAACATGCTGTCACCAAATGGAGCTGTCACCCAGAGTCATAGAAGAGACTCCCTCCATTATTCTTCCATTGACTTCAGAAACGTCCAACCAGAGTCAGAAGAGATAAGAGGCATGTCCTCGCTGACAACTGAGTACGCCGCCCTCCGATGTTATCCCGGTGGAGTATCGGAAGCAGAGAGCTCAACAGGAGCTGATCAGCCCAACAGCAGCATCTCAGCTGTTATGACGTCTGAGGAAAATCCAACCATACAGGAAGAGCAGGAGGCAAATATCAGGGAAGAGTTCTCCCAGCCGTCAGAAGATACAATATATGAGAGCATCACCCACTGAGCTAGAATTACTCACACAGTCAGTGTTTTgacatgtcattaaaaaaaaatatttttttaaagctttcaaaaaacagtaaaaagtaaaaaagtgtgtgtgtgtgagagtgtgtgtgagagtgtgtgtgagagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41082 lncRNA upstream 10987 10662270 ~ 10675110 (+) False rassf8b
TU41078 lncRNA upstream 26766 10648692 ~ 10659331 (+) True G27731
TU41076 lncRNA upstream 27956 10653704 ~ 10658141 (+) True G27729
TU41051 lncRNA upstream 191648 10479441 ~ 10494449 (+) False lrtm2a
TU40968 lncRNA upstream 320526 10287478 ~ 10365571 (+) True G27651
TU41144 lncRNA downstream 474221 11176424 ~ 11178043 (+) True G27754
TU41155 lncRNA downstream 476319 11178522 ~ 11179311 (+) True G27760
TU41154 lncRNA downstream 476564 11178767 ~ 11179311 (+) False G27760
TU41173 lncRNA downstream 574226 11276429 ~ 11296804 (+) True G27777
TU41174 lncRNA downstream 595044 11297247 ~ 11300131 (+) True G27778
XM_043237800.1 mRNA upstream 11123 10662231 ~ 10674974 (+) False rassf8b
XM_043237799.1 mRNA upstream 11123 10662232 ~ 10674974 (+) True rassf8b
XM_043237798.1 mRNA upstream 11123 10662233 ~ 10674974 (+) False rassf8b
XM_043236640.1 mRNA upstream 43646 10533980 ~ 10642451 (+) False cacna1c
XM_043236986.1 mRNA downstream 4929 10707132 ~ 10708947 (+) True LOC122342850
XM_043236696.1 mRNA downstream 12557 10714760 ~ 10716607 (+) False LOC122342684
XM_043236697.1 mRNA downstream 12572 10714775 ~ 10716607 (+) True LOC122342684
XM_043236694.1 mRNA downstream 15550 10717753 ~ 10720201 (+) True LOC122342683
XM_043236693.1 mRNA downstream 20122 10722325 ~ 10726265 (+) True LOC122342682
TU40966 other upstream 318185 10365752 ~ 10367912 (+) False lamtor4
TU40943 other upstream 482329 10158159 ~ 10203768 (+) False G27629
TU40942 other upstream 482329 10198646 ~ 10203768 (+) True G27629
TU40736 other upstream 1095779 9587319 ~ 9590318 (+) True G27490
TU40764 other upstream 1107523 9577315 ~ 9578574 (+) True G27508
TU41106 other downstream 5436 10707639 ~ 10708872 (+) False LOC122342850
XR_006250736.1 other downstream 683927 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other downstream 683927 11386130 ~ 11416227 (+) False acss3
TU41253 other downstream 987111 11689314 ~ 11691129 (+) True ndufb2
TU41254 other downstream 987111 11689314 ~ 11691129 (+) False ndufb2

Expression Profile