RNA id: TU41144


Basic Information

Item Value
RNA id TU41144
length 534
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G27754
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11176424 ~ 11178043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGCAATCTAATTCCACACCACCACCACAATATCTTCATCTCTTTATACACAAAGCTCTAGGGGAGCGTATAAAGTTTCAACCATCATAAAAACATGCGAGGCAAAAGCCTTTTCCTTGCATCTATCTGGTTGTTGGTCCGCTTCTGTTGAGATATTAAATGTTCAAGCAAAACAACCTATGTAGGTTTCAACGAGATCTTTGAATGCTGCACTGTACCTTGAAAATCTATCCAAAATATGTTCCTTCTGTCTGTTCCTGATCTTATTGTGAATGATTTATCACTGCCTAGAAAATAAAACTGTCTTCataatctttaaaaactttGCTGTGCCTTTGTTTCTAGCCCTTGATTCTAATCATCAAAATCAAGTCCCATCCTacatattttctcatttattgtactttcattcagaaatgctaGACATTACAGAAGTAAAATGACTTGTGAGTGTTCATAAACATGCAGAGCTTAGAGAGAGGGGTAGAGGTGTAGAGAGACacaccgagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41082 lncRNA upstream 501314 10662270 ~ 10675110 (+) False rassf8b
TU41078 lncRNA upstream 517093 10648692 ~ 10659331 (+) True G27731
TU41076 lncRNA upstream 518283 10653704 ~ 10658141 (+) True G27729
TU41051 lncRNA upstream 681975 10479441 ~ 10494449 (+) False lrtm2a
TU40968 lncRNA upstream 810853 10287478 ~ 10365571 (+) True G27651
TU41155 lncRNA downstream 479 11178522 ~ 11179311 (+) True G27760
TU41154 lncRNA downstream 724 11178767 ~ 11179311 (+) False G27760
TU41173 lncRNA downstream 98386 11276429 ~ 11296804 (+) True G27777
TU41174 lncRNA downstream 119204 11297247 ~ 11300131 (+) True G27778
TU41185 lncRNA downstream 155430 11333473 ~ 11334442 (+) False myf5
XM_043236652.1 mRNA upstream 19680 10998929 ~ 11156744 (+) True syt1a
XM_043236655.1 mRNA upstream 19680 10998940 ~ 11156744 (+) False syt1a
XM_043236654.1 mRNA upstream 19680 10998940 ~ 11156744 (+) False syt1a
XM_043236653.1 mRNA upstream 19680 11085795 ~ 11156744 (+) False syt1a
XM_043236579.1 mRNA upstream 193610 10857085 ~ 10982814 (+) True nav3
XM_043236205.1 mRNA downstream 146590 11324633 ~ 11326693 (+) True myf6
XM_043237576.1 mRNA downstream 153502 11331545 ~ 11334456 (+) True myf5
XM_043237631.1 mRNA downstream 208087 11386130 ~ 11415756 (+) True acss3
XM_043237632.1 mRNA downstream 208087 11386130 ~ 11415756 (+) False acss3
XM_043237634.1 mRNA downstream 208087 11386130 ~ 11414379 (+) False acss3
TU41106 other upstream 467552 10707639 ~ 10708872 (+) False LOC122342850
TU41104 other upstream 476299 10699546 ~ 10700125 (+) False zmp:0000000650
TU40966 other upstream 808512 10365752 ~ 10367912 (+) False lamtor4
TU40943 other upstream 972656 10158159 ~ 10203768 (+) False G27629
TU40942 other upstream 972656 10198646 ~ 10203768 (+) True G27629
XR_006250736.1 other downstream 208087 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other downstream 208087 11386130 ~ 11416227 (+) False acss3
TU41253 other downstream 511271 11689314 ~ 11691129 (+) True ndufb2
TU41254 other downstream 511271 11689314 ~ 11691129 (+) False ndufb2
TU41815 other downstream 1972713 13150756 ~ 13154358 (+) True kin

Expression Profile