RNA id: TU41257


Basic Information

Item Value
RNA id TU41257
length 1486
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G27836
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11653472 ~ 11654957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTATAAAACTGTCATTACAGTGATTTATTATAATGAACCATGAAAATAGCCAACCAGTGCTGTGTCTGTGAGCCTctgtccttcacacacacatacactcacacacaaacagtaaaaaaaaaaataaaccagagaggaagaaataaaaatagtgcTACAGTCACAGAAACATTCAGCGTTTTTGTCAAGAGCGCTTGTATTTACAACCATATTCCAAAATGGGGATGGGAGCGAATTATACAAgcatagaaaagaaaagaagccaATATTTACAACTGTTTCTGGAGAAAGCTGGAGTAACCACCTAtacattaaattacactttCTACAAATAACCATtgatattcaaaaataaaccgCTTACCCCCTACAGGAAGGACCTCTCTTTCTAAAGCTGCCACAGAGAACAGCACGCATCTGTCTGTGCCGTATTTGCCTTCCGTTTCTCGTGCGCACTTCAAACATGCGCACGGACGCGGGCGGCACGCAAGCATACACGCTCCCTTCCGCTTAAAAACAGACACTCAAGCACACAGACTCGCTCATTCACACAAGTGCAGTCTCCTGGGGCAGTGAAGCGGCCTATCAGAAAGGTCTCCTCTGAATTTCTGCAGCGGTGCACAGATATTTTTGTTACAtggaggaataaaaaaaataataattctgtactttttttctctATACAAAATCTTTTTGCTATATAATGAGCCActagataaaacaaacaacagatgAAAAACAGTGAGAAACGGGAAGAAcaggggggggaaaaaaaggtaaGGAGCAAACTGGAATGTCCCATGGCATTGCACTGCACCGGGAGGAAAGAGGGAAGGACTCAACGGGAAGAGGGcggttaaaatgaataaaaacattaaaaataaaaaaaagacgtCTGGAAAAGACAGGATGGCAGTACAAGATTATGGGAAGGAGAGAGGTGTGGGGGATTCTGGGTAAGTGATGAGCACCAGGGTTCATTAACCATCATCTTTTACACAAAGTCTACTTTTACAGTTCgcgtttatctttttttaaaatgtacccTTCCCCCCCACCGGTTTCCATTAGCCTTTGTGAAAAGGtacatagaaaatatttacagtggTGCTGTGTTGCCTATGTTACACGATGTAGCTCCACCCCTCTCTGAGTGAGTTTGTCTGGGGGGGCGGGGTTGAGTGGGTGTGGTCAGTGCCATCCTGTGCCCAAGTAGCCGGTGCTGTGAAAGGGGGCGGACGAAGGGGCAGGTCCTCGGTTACCGCCGGCGATCTGCGAGACGCTCGGGTTGGGCGGGGTCTGTGTGGGAGGAGTTTGTTGGGGAGGTGGTGGCGGAGGCGGGGGTAATACAGTTTGTTGATAAGTGGATGGGGTCACTGAGGGGTTGGCTGGTGCAGACTGGTGTAGTAGAGCGGTTTGAAAGCCACCCATGTTCTGGAACGGGTGAGGTGCGGTAGGGGAGGGAGGGGCGGAAGGGGCGGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41245 lncRNA upstream 51437 11599822 ~ 11602035 (+) True G27827
TU41246 lncRNA upstream 51727 11599745 ~ 11601745 (+) False G27827
TU41244 lncRNA upstream 55157 11597872 ~ 11598315 (+) True G27826
TU41243 lncRNA upstream 55769 11597295 ~ 11597703 (+) True G27825
TU41205 lncRNA upstream 208756 11443224 ~ 11444716 (+) True G27805
XR_006250739.1 lncRNA downstream 19043 11674000 ~ 11678670 (+) True LOC122343275
TU41280 lncRNA downstream 29926 11684883 ~ 11685136 (+) True G27850
TU41281 lncRNA downstream 30756 11685713 ~ 11688940 (+) True G27851
TU41282 lncRNA downstream 30756 11685713 ~ 11688756 (+) False G27851
TU41284 lncRNA downstream 30756 11685713 ~ 11688820 (+) False G27851
XM_043237648.1 mRNA upstream 714 11618061 ~ 11652758 (+) True lhfpl3
XM_043237647.1 mRNA upstream 714 11618061 ~ 11652758 (+) False lhfpl3
XM_043237649.1 mRNA upstream 46901 11602201 ~ 11606571 (+) True guca1a
XM_043237650.1 mRNA upstream 78235 11573747 ~ 11575237 (+) False llph
XM_043237651.1 mRNA upstream 78235 11573946 ~ 11575237 (+) True llph
XM_043237652.1 mRNA downstream 34363 11689320 ~ 11691116 (+) False ndufb2
XM_043237654.1 mRNA downstream 34363 11689320 ~ 11691116 (+) False ndufb2
XM_043236998.1 mRNA downstream 85775 11740732 ~ 11783807 (+) True sema3c
XM_043236689.1 mRNA downstream 142025 11796982 ~ 11815305 (+) True gnai1
XM_043236875.1 mRNA downstream 359629 12014586 ~ 12018965 (+) True slc35e3
XR_006250736.1 other upstream 237245 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other upstream 237245 11386130 ~ 11416227 (+) False acss3
TU41106 other upstream 944600 10707639 ~ 10708872 (+) False LOC122342850
TU41104 other upstream 953347 10699546 ~ 10700125 (+) False zmp:0000000650
TU40966 other upstream 1285560 10365752 ~ 10367912 (+) False lamtor4
TU41253 other downstream 34357 11689314 ~ 11691129 (+) True ndufb2
TU41254 other downstream 34357 11689314 ~ 11691129 (+) False ndufb2
TU41815 other downstream 1495799 13150756 ~ 13154358 (+) True kin
TU41889 other downstream 1650712 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 1650712 13305669 ~ 13315684 (+) True G28252

Expression Profile