RNA id: TU41281


Basic Information

Item Value
RNA id TU41281
length 3228
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G27851
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11685713 ~ 11688940 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAAAACCAACCACTAGCAGTTGAAGAGCTATGCAACGCAGAGTGGAGAAACACGGCAAGACAAAGCAGAAAACTGCGATGTGGCGCGCCGACCGTCGAGTTTGCCCAGTTGAGAGGGACACGAAACTAAAGAGATAGTTAAATCGAGCCGTTGTGTCGCACGGGATTGCCTGCTACGCCAAGTCAAATCATCTTCAGGTTTTCACTCTCGGGACGCGTGAGATTATAGACCGGACATAAAGACGGGCTACATTTCAACCAGTTGTGGAGCTAGGGTGTTATTTCAGCGTCGATATCGCTCATTTTGTTACGCTTTCAAAATGGCGATTTTCTCCGCTCACCCCCCTTCCCGGTCTTCCTGAATAGAATGAATGGCATTGCCCTTGACCAATAATACGCGCATTGTCCTGATTTCACGACGCTGATTGGCTACAGATGACATCATCTGAATTCCACATGTGGGCGGGCTCTGAGCTGCGAGGGGAGAGCGGCGCAACCGGAGATCCGAGCGCGTTTGTTTGTGGAAGACAGTAGGGCGCCTTTAACTCCAACTCCCGTTAACCGTTTCGTTTACTCTAATCTCAGCGGATCTCTGAAACACGGCGTTTTTTTCCCGCGGAGTTGTTTTACACGCTAAATTAGCTCGcgtcacaaaacaaaaataaatcgcAGGAAGATGGCGTCCACGCAGCACTGCACAAAGCGCGCACTGGGCGGGGTCACGGGCTTTCCAGAAAATACCGTCGCCGAAAACCGGATTCGGCTCTGTAAGAGTAACGTCACATCATCATCAGCCGAGCGTTTTAAAATGCACCTTGACGTGCTTTCGTCGCCTCACACACCGGAGTATAAATGCAGCGTTTCGGACATTCTTTCGGTTCTTTTTTAAAGATCCGGTTATAAACGATTCGGTGATTCTTTTTCTCCTGCGTCGTGACGTAATGACGTGGCCCCTGACAGGGTGACGTGACAAATTACGGGCATAAATTAAGACATCACAAAGGCATACAGGGCTGTTTATTACAGGCTTTGCTCACGAGCAacacgtatttattttttattttttttgcagtatcgTGTTGTAATGAAAATACATTGCGGTTAaatgaaatcattataataatagtaaagtTCTATTTAAGTCAACTCCGTTACATATGATTGTTAATAAAACTATCGTCGGctaaactcattgaaagcatGTGGCCggtctttatttaatttattgagatTTTACTTCGTCTGAAATCGATAAACGTTCCGCTGATGTTAGGAAGGGATAGCATTTGAgtccaaaaaaaatttaatcgcCTTAAAAGtcgtccaaatgaagttttttAGCAATGCTATTACCATGTCTACGCGGTCTTGATGGTTTttggtgaaataaataaatcggcCACGCAGTGCGGTCGCGTTCGTTCAGTCGTGTgtgttttggggattttttttttttttataaaggtcAAGCTTCACCAAAGAGACGATCCTGTGTTACGTCACAATAGCCGCATACGAGCCGCAACAAAAGGCTCGCGCCGAAGGAGCGCGCTTCCTGTTTCGGTGGCGGCCAGGAAGCGAGTCGCGTTTGGAAAACGTCCCTGCCGAGGTTTCCCGTCCGAGCCGCCCCGCTCGCCGTTAAGTACCGCCGCGGCTCCTCCGTCGACCGTGTTTCCAGAGCCGCCGCCATGTTGTCGCTCCCTGGCCGCCTCCTCCGCGCCGCTCCGGGACGGGGATTAGTAAATGGCGTATTGGAGCGCTTTCTATCGAGCCCTCCGCTGAGGGAGTCGCTGTCGCTTTGTCGTCTCCAAAATGCCTGTTTTAAATCGATGCCCGAGCAATTTCGCTCctaatatttgtttaaacttATTAGCAGAGTATGCTTATGTTATCCAGTTGTCTTATTCCATATTGCAACGTTacagctttattattattgttagcgtttttttaaatcaggggCTCAAACAACCAAATTGGTAGGGGGGGAAATTGTATTGAAATAACCAAACTTAACCTGTAAAGCATGCTGTGTACAACTTCTAAGGCCTGTAAATGACCAacagtgtgtgaaaaaaaaaaaaaaaaactgttcttcaGTCTTTTACTACCTCTGTCTGAATTTAAGTCTTTACCAAGCCGTTATTGATATTTATACGCATAAGTAGTCTGCTGTAATGTTATTGATTCACGTTTCGTTTGCACCAAGCTGCATACGTTTGCTCTGTGGACCTGAGCAGgacgtgtgtgtttttcatcttAATTATGAGCACCGTATCCATTTATATCATGCTCTATTCCCTGGTTTCGAATGTAGGCTAAAATTTATGTGTGAGCCGTTTCAACTGAGAGAATCTTTGACCGACTGATGATAAAACCAGTGTCTTTGTCAAGATGTAAACATGCACTGTATTCAAAATCACATTCATAGCTTGAATGGTGGCTCAATCTAAAAGTAGGAGACTACTACAAAGACGCTAAAAGTCTGAAAGAGCCAAGCAGCAAAATCAATTTTGACTGAAGAGAGACATTATGATCTGAGCAGCTTTATGCATGCAGCCCCTGGTCTTATTggatatttaaaacacaatgtgTCACGTGTGACAATACGAGACGTAATAAAGAGGTTCAGTAAACTACTGCAAtaagttacaattaaaaattatattctgaTTATCTTATTTGATTTTGAAGTCGGTGTTTGAAGGGTTAAGATGCCGAGGCCTGGTTTCATAGACCGGtcttagcctaaaccaggatttatgaacaaaacaaaacaaaggccCTGATATATCTTAAGATCAATctgtgcaagtttctttcagttgaaacaccTCAGACTAACATTTTCACCTAAGACTAGAGTAGGCGGGAGTAAAGATATAGCCTGATAACCTGTTAACATTATTCCTCACTCTTTACACAgctggtatttatttataattgacATCACATtagttgtgtttatttatgttattctGCTGACGCTCCTAGTTTCTTCCAGCccttatgttatttatataatattttcttagATGATAGCATTTAAAGACTAATAGGTGATTGAATGATTAATAGAAATGCAGAAAATTGCTGTTTGTGGAAATAAAGTACTATTTCTCATGTGACGATGTCTCCTGTGTCATGTTTTCCTAGTCGgtagtattaatataaatgtttagatGCAACTTCCtaaacatttcttcatttaatgcacattgtaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41280 lncRNA upstream 577 11684883 ~ 11685136 (+) True G27850
XR_006250739.1 lncRNA upstream 7043 11674000 ~ 11678670 (+) True LOC122343275
TU41257 lncRNA upstream 30756 11653472 ~ 11654957 (+) True G27836
TU41245 lncRNA upstream 83678 11599822 ~ 11602035 (+) True G27827
TU41246 lncRNA upstream 83968 11599745 ~ 11601745 (+) False G27827
TU41298 lncRNA downstream 63728 11752668 ~ 11785852 (+) True G27862
TU41311 lncRNA downstream 114192 11803132 ~ 11815305 (+) False gnai1
TU41607 lncRNA downstream 296412 11985352 ~ 11986186 (+) True G28077
TU41608 lncRNA downstream 300931 11989871 ~ 11991884 (+) True LOC122342766
XR_006250646.1 lncRNA downstream 300941 11989881 ~ 11991424 (+) False LOC122342766
XM_043237648.1 mRNA upstream 32955 11618061 ~ 11652758 (+) True lhfpl3
XM_043237647.1 mRNA upstream 32955 11618061 ~ 11652758 (+) False lhfpl3
XM_043237649.1 mRNA upstream 79142 11602201 ~ 11606571 (+) True guca1a
XM_043237650.1 mRNA upstream 110476 11573747 ~ 11575237 (+) False llph
XM_043237652.1 mRNA downstream 380 11689320 ~ 11691116 (+) False ndufb2
XM_043237654.1 mRNA downstream 380 11689320 ~ 11691116 (+) False ndufb2
XM_043236998.1 mRNA downstream 51792 11740732 ~ 11783807 (+) True sema3c
XM_043236689.1 mRNA downstream 108042 11796982 ~ 11815305 (+) True gnai1
XM_043236875.1 mRNA downstream 325646 12014586 ~ 12018965 (+) True slc35e3
XR_006250736.1 other upstream 269486 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other upstream 269486 11386130 ~ 11416227 (+) False acss3
TU41106 other upstream 976841 10707639 ~ 10708872 (+) False LOC122342850
TU41104 other upstream 985588 10699546 ~ 10700125 (+) False zmp:0000000650
TU40966 other upstream 1317801 10365752 ~ 10367912 (+) False lamtor4
TU41253 other downstream 374 11689314 ~ 11691129 (+) True ndufb2
TU41254 other downstream 374 11689314 ~ 11691129 (+) False ndufb2
TU41815 other downstream 1461816 13150756 ~ 13154358 (+) True kin
TU41889 other downstream 1616729 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 1616729 13305669 ~ 13315684 (+) True G28252

Expression Profile