RNA id: TU41298


Basic Information

Item Value
RNA id TU41298
length 525
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G27862
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11752668 ~ 11785852 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttaatgTTTCACAGTTCTTCGTTTTACTGAAATTGTGCCGACatacaaaactattttatatttaaatgaatcacagTACGACCACAAAATGGCAGAACCTTTGCCCTCGATAACCATTTAAAAGTATAACTTGATACGATAATCAAGCCGAATACAGAAGGAAATCATTTCGCGACGCAAAAATGCAGagcttataaattatataaatagaatCGCGGTACTCCGAGCGCAGATAACAATTACAATATACAATTCTCACAAAGTGcgccatcaaaaaaaaaaaagaaatcgaaCACGCAAAGCTCCCTCGCTTTATTTAACGATCAGAGAAAGTTTGTTATTGCTCGGTTTCGTGCACGCCACGATCAATCCGATCAAACAGCTGGCGAATAAGACTAAGCCGGCCACTATGAGTCCGATCTGAACCCCCTCCAGCAGCTCCATCCGAGAAATCAGCTCTTTCTTGAACATGTCGGCCGTCTCGTCGTCCAGAACCGCCGTCTAAATCA

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04973 Carbohydrate digestion and absorption
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41281 lncRNA upstream 63728 11685713 ~ 11688940 (+) True G27851
TU41284 lncRNA upstream 63848 11685713 ~ 11688820 (+) False G27851
TU41282 lncRNA upstream 63912 11685713 ~ 11688756 (+) False G27851
TU41280 lncRNA upstream 67532 11684883 ~ 11685136 (+) True G27850
XR_006250739.1 lncRNA upstream 73998 11674000 ~ 11678670 (+) True LOC122343275
TU41311 lncRNA downstream 17280 11803132 ~ 11815305 (+) False gnai1
TU41607 lncRNA downstream 199500 11985352 ~ 11986186 (+) True G28077
TU41608 lncRNA downstream 204019 11989871 ~ 11991884 (+) True LOC122342766
XR_006250646.1 lncRNA downstream 204029 11989881 ~ 11991424 (+) False LOC122342766
TU41651 lncRNA downstream 233251 12019103 ~ 12019422 (+) True G28094
XM_043237652.1 mRNA upstream 61552 11689320 ~ 11691116 (+) False ndufb2
XM_043237654.1 mRNA upstream 61552 11689320 ~ 11691116 (+) False ndufb2
XM_043237648.1 mRNA upstream 99910 11618061 ~ 11652758 (+) True lhfpl3
XM_043237647.1 mRNA upstream 99910 11618061 ~ 11652758 (+) False lhfpl3
XM_043237649.1 mRNA upstream 146097 11602201 ~ 11606571 (+) True guca1a
XM_043236689.1 mRNA downstream 11130 11796982 ~ 11815305 (+) True gnai1
XM_043236875.1 mRNA downstream 228734 12014586 ~ 12018965 (+) True slc35e3
XM_043236873.1 mRNA downstream 234769 12020621 ~ 12027468 (+) False mdm2
XM_043236874.1 mRNA downstream 235713 12021565 ~ 12027468 (+) True mdm2
XM_043236993.1 mRNA downstream 287851 12073703 ~ 12147286 (+) True LOC122342854
TU41253 other upstream 61539 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 61539 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 336441 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other upstream 336441 11386130 ~ 11416227 (+) False acss3
TU41106 other upstream 1043796 10707639 ~ 10708872 (+) False LOC122342850
TU41815 other downstream 1364904 13150756 ~ 13154358 (+) True kin
TU41889 other downstream 1519817 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 1519817 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 1528016 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 1537436 13323288 ~ 13530631 (+) True G28249

Expression Profile