RNA id: TU41347


Basic Information

Item Value
RNA id TU41347
length 3385
lncRNA type read_through
GC content 0.43
exon number 2
gene id G27894
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10446435 ~ 10562772 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttgtcttttttttttttttttcttctcataacAGAGGATACAGGGTATGTGTTTTGTCGCCCCGTGCAGAGTACAGGCCTTTTGACACATGCTGTATAAAATAAGAGCTAAATGAACAGTAATGGCAGGAGAGACCGCGACCATTAGACGAAACTCCTCTCGTTAATAATTCACCGGTTTTCTCTGAATTCTCTGACGGAGGATTTTTAAGAGTTCCTCTCCAAAAGGAGTTTGCACAGGAAACACAGGGAAAAGTATAATCAGTTTTTGCAATCAAGTTATTgttcataaataatttgtaagacacagattaaaatatatatatacatatattcaacATACTTTTGAATACATGTATAtctgtacttatatatatatatatgtatatatatactcagCTTATGGCTGCAAATATCACCGAACACAGAGACAAAGCCCTAGACGCTTAACTGCTGGTGTGGGTATAGCACACAAATTAGTTGTACTTTGATTTACAACTTTTTGCCAGCAACCTTACCAGTAATTTGCATTGGTAATGAATAGTGTGTGGGAAAGATTGTTGCTATAGTTACAGCGGAAGAGCATCTCCTAAATCCTGATGAGGTGGTGCGATATTTGCTCCACACCCTTGTGCCTCACTGCACATCCTTCCTATAGATGGCAGCATTGTGCAAGACACCCAACGGCGACGTACTAGCAACGCTATATTCTCTAAATGTTCAGTAATACTGAGGAAATGAGTACGTTGGTTCATGTTATCAGTGTGCGGCTAGTTTTTCGCAGCCTTTCCCTTTTTCGTTGCTTCAGAAAAGCTTATATTGATAATATATGCGGGCTTCCGAAAGCCCGAGTGAAATTTATCTGAATTATTTAGTCTAAACAACTTCTGCCCTCAAGGAAAAGCGGATTATGCAAATTGGTCCACAAGCAGAAAATTGATCACACAGGCGCAATCGATTCTCCTCCGTCGCCAGCCCAAGAGAAAAGATCAGACTAAATCAGATATGACGTCCTAGTCCAGAATTAAACGACAGATCAACAAAGACATTGATTTATATTGCACAGAAAAGTCTATCTTAATAAAGGTAAGGTTTATTTCCTCCTCAGCTATTGTCGTTCTGGTTTTGTTTAGAGGGCAGCTATCCTGTAGGGCCACTGTGCTTCTTTAGCCACCAAGGTATAATTAACAGCTCCAATAGCCACGATCTGCCACCCTCCACTAACATCACAGAGTCCTCAGCCTGCTCTACATTAGCACTTCACGATACTTCAAGACACTTCACGATAGACACCAGGGCTGGATTCTTCTAGTCTTACAAAAACACGTCTGACCTCTAGAGATGAACGTGGAGAAATAGCAAACAGTAAACGAACAAAACAATGTTATCAACACAAATTatcacacaatacaaaagacAAACCTCACacgtaaaaacataaaactgggGTCACGTCACATTGTATAGAATATATTATAGCTGATAAATAAGGTGGgattatttcaaatatgatATGTGGGGGTTATGATGTCAAGTTCACACTGGGTAGGGGTATGGGTTACAATTAAGGTTGGAGGGGGAGAGTTAGTATTAATGTTTGGGTTGGGAGGAGAGCTAGGGTTCGTGTTGGATGTTTGGATGGGTGATGGAGGGTTAGAGTTATGGGGTTCGTATTAGTGATGGAGATTTATGGTAAGAGCAGTGATTATCATTGGCATTTTGTAGTTGTTAAATGGTTGTTGGTAAGGGTAGGGATTCGTGTAAAAGGTTTAGGGTTGGGGGTTAAGATTAGTGCCGGAGGCTTAGGGTTGAAATTGTAAGTTATGGTTAGTTTATGGTAAGCATTACAGGGTTAGGATTTGAAGGTTGGGGTAGAGTTGAGGGATAGGATTGATGATGGAGGCTTATGGTAAGGGGTATGGATTTATGTTGGAGATTTAGCGCTGGAGGCTTGGGGGTTAGGATTCATGATGGAGGTTTATGGTAGGGATAGGGGTTACTGTTGGACCTTTAGGGTTGGGGGTTTAGATTAGGGATGGAGGTTTGTGGTAAATTCAGGATTTCTGTtgtacattttgaattaaaGTTTGGGAGTAGAGCTGGATTTTTAAGGTTAGGATCGGTAGTAGAGTTGGACGTTTTTGATTACACCATTTCTACACCGAGCACAATGGTTGACACGAGATTAAGGCTGTCTACATGGAACACTGTCAAGTCaacatttcaaatcaatttgtcattttgtcaaAAGTTGGACAAGCCCATGTAGTATGTCAGAAATTGGGCCATCAATATATGGTGCAATGCATCAGAAAGTATCCATTGTAGacagcatttattataatgagTGTTATTGGCTTTTGATGTGATGTCCCGCTTGCATTTGCGACCCGGTGTAGACTGTGTTAGAGGTATGGTTATGGTAGGGGTTGGTGTTAATATTGAAGGGATGGGATTAGAGCTGAGGGCTTGGGTTAGTTTTGAGAGGTTGGGATTAGAGTTAAAGGTCTGGATTAGAGGTATGATTTGGAGGTTTGGGTTGATGATTAGGCTGCTACAGAGGCTAATGCTAATGACAGCACAAGATCCTCTAGAAACATCAGGGTTCAGAACTGTGAACAGTTGCATCCACACCTCCTCTGCTGAGATCCTCTCAACATTGGAGGAGGGTGGGGGAGTTCTAAAGTGCTGAGTGGTCCCTCTTGTCCTGGGGCAAATAGGTCAAAGGTCATAGGCCAAAGTTTAGAGATAGAGTAAAGTGTAAGTCTGAGAGTCAGAGAGGGTCTCAGGAAGGACAGAGAGACAGGAAACAGGGATGATGAATCCTCCGCTGGTCAGCTAAATGATCATCAAATGTGCAGCTCAACCAGTAAAGGGTTCTTTAGATTTGTGGCTGACCTCTGAACTCTGACCCCTCTCCCCCATTACCCTATGCAACTGATGAGATCTGTTTCTCCTCCGGGTCGGCTTCTGCCTCTGCGTCACCCATCAACGGCTGCCTCTTCTTTAGCTCTCGTTGGTATTTTGCCATTAGAGAGGCGTAAATGCAGCCATACGCTGCGGCGGCCACCATCATAATACACACAATTCCACAGACCACACCAGCGATCACTACTGTACCGATCGCCTTGCGAACACTGACTGGCCGATAACGCTGCTTCACACAGTCTGGTAGCTCCGCCTCCGTACGCACCACTGCACCTTCAGATGACGGAGCGGCTGTCCCTCGAAAACAAGGTGGAGATCCACCCTTCGTGCTCCCAGCCCCACCTCCATTCTCATCTTCCAATTGCAGACAGTAGTTGAACATCTCCACAGGAACGCCCCTGATGTCACGACCCCTTAAGTCCTTCGGAAGTGTACACTCAACGGCATCGACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41360 lncRNA downstream 17563 10484922 ~ 10486071 (-) False cacna2d4a
TU41330 lncRNA downstream 113829 10389447 ~ 10389805 (-) True G27883
XR_006250795.1 lncRNA downstream 154343 10322734 ~ 10349291 (-) True LOC122343524
TU40941 lncRNA downstream 365578 10083419 ~ 10138056 (-) True G27628
TU40939 lncRNA downstream 487880 10015182 ~ 10015754 (-) True G27627
TU41375 lncRNA upstream 87126 10649898 ~ 10659974 (-) True G27910
TU41414 lncRNA upstream 151858 10714630 ~ 10720284 (-) True G27940
TU41416 lncRNA upstream 151858 10714630 ~ 10716610 (-) False G27940
XR_006250620.1 lncRNA upstream 367825 10930597 ~ 10932401 (-) True LOC122342624
TU41464 lncRNA upstream 563730 11126502 ~ 11259483 (-) False G27974
XM_043236584.1 mRNA downstream 19533 10477213 ~ 10484101 (-) False stk38l
XM_043236583.1 mRNA downstream 19533 10477213 ~ 10484101 (-) True stk38l
XM_043236582.1 mRNA downstream 26653 10463761 ~ 10476981 (-) True LOC122342626
XM_043236585.1 mRNA downstream 51827 10448839 ~ 10451807 (-) True fgl2a
XM_043236589.1 mRNA downstream 55270 10446645 ~ 10448364 (-) True LOC122342631
XM_043236647.1 mRNA upstream 75011 10637783 ~ 10645759 (-) True napepld
XM_043236646.1 mRNA upstream 79766 10642538 ~ 10645757 (-) False napepld
XM_043236648.1 mRNA upstream 79766 10642538 ~ 10645253 (-) False napepld
XM_043236649.1 mRNA upstream 79766 10642538 ~ 10645253 (-) False napepld
XM_043236692.1 mRNA upstream 113705 10676477 ~ 10685951 (-) False ints13
XR_006250794.1 other downstream 140068 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 146429 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1203455 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1494330 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1562363 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 859297 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 863725 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1451859 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1919148 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1919330 12482102 ~ 12489156 (-) False cpm

Expression Profile