RNA id: XM_043236643.1


Basic Information

Item Value
RNA id XM_043236643.1
length 2510
RNA type mRNA
GC content 0.47
exon number 10
gene id dcp1b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10524531 ~ 10533543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGTCTTGTTGTCAGCGCAAACATGGCGAGAGCGGCAGCCGACGAGGAGTTAGATAAGTGAAATAAAGCGATGTATTCGTGTTTTACCAGTTCGTAGGTCACTGAAACCATACACCAGGAGACCGGGACGCGAAGTAAAGCGTTCCAGTCCCGTTTTACAGAGTTGAATCTcgttttaaaaggcatttttagGATTTGTGCGGTATTTTAAGTGCAGgACTGGAGCCATGACTGCAAGCACTGGTGGAGGCGGGAGCTGTTTATCTATGAGTCTGTCGGCCCTAAAGAGACTCGACCCTTACATCAGCAGCATCACGGACCTGGCCAGCCAAGTAGCACTTTACACCTTCAACAACACCACTAATGAATGGGAAAAGACAGACGTGGAGGGAACTCTGTTTGTGTATAACAGGCTTGCCTCCCCCAGGCACGGCTTCACCATCCTGAATCGTTTGAGCATGGACAACCTGACCGAACCCATCACTAAAGACTTAGATTTCCAGCTGCAACATCCATTTCTCCTGTACAGGAACGCTCGCTtgtcCATCTATGGCATCTGGTTCTACGATAAAGAAGACTGTCAGCGCATAGCGGAGCTCATGAAGAATTTGGCAGGTCTGGAACAGCAGTTACAATCTCAAATGGCGATCGGCTCGGTCTCTCCGCGATCTGCAGAGCAGGGTGTGGATATAATGCAGATGCTCACTAAAGCACGAGATGACTATGATAAGGGAAAACTCTGCGAGCCGAAAGAAATTGGCAGTGGTGGCGTCATCTACGGAAACCCCCATCTGATCAAACCCATTCCCCTCAAACCAGCACAGGACACGCACATTCAGGGACACACGCAGCAGGATACGGAGATGGACACGAAGCACCTCTCGGTTGTCACTTTGTTCAGTGCTCAGTCAAAACCGGACTCTGTCTCGCCGCAGCCCGCCACAGCTGTCAGCAGGCTGGGTCCCGCGCGGTCTGCGGTGGCCCGCTCGCTGTCATACGATGACCCTTCTCCAGCAGGTGGCGCCACGGTGTCCAACGCCCCCGCGCAGCACTGTCCAGCCATACACAAACTCATGTCCGGTTCACTGCTTCAGCCCCTGTCTGAATCTCCAGAGAGCCGCATGTGTGAAAACGGGGCCGTCCAGAACCAGATTGACCCGATACAAAAACTGCTAATGAGCCCTCTTCCTGTAGCGGGGACTCCAGGGATGCCTTCCTTACAGTTTAATCAGGGAGAAAGCGGGTTGGGGGCTAAAGCCTCGGGGCCGGTCCCAGCTCAGCATTTGCTCTATGTCCCGAATAAAGCGCCCCCTGCTGGAGCGGCAGGGAACGTGGTGTCGCCACATGAGCTTCTGCAGAGGCTCACATTGGTGCAGCAGGAGCAAGAGCTCCACCCTCATCAGGAGCTTCTCCAGCCCAGTCTGACCACCAGCAGCTCCAGCCTGAGCAAAACTAACTCCACACAGGTGAGCTCACCTCAGCGTATCCCAGCAACTGTAGCCCCCACCATGCTCCTGTCACCCAGCATGTTCACCCAGACTAAAACCACAAGAGCAGAACCAGAACCAGCTGAAATCAGAGCACTTAGCAAGACTCAGCTGCAGGCCACGCTGCTGCACCTCATCAAGaatGATGCCTCTTTCCTGGACACAATCTATGAAGCATATGTCTCCCGTCTCGCAACAGACTCCAGCTCAAAACCTTTCTGAAGCATGTACTCGTACATAAAGCTGTCATGCTCCGAACCCATATCATCGTCCCATCTCAGGACCACCCTGCTATTCTGAATGTAGCATCCGAGAAGCTGAGCACCTCAGCACCAGATTCATAACAGGAAAACCAGTTTGATCTTCATACAGTCAATTAAATGATCTGAATGTCATATCAGCTTCGAATTTGCCGCTTGTACATACGGGGCAATCTTAAGCATTTTAGAATTTTCTGAAAGAAGAATTTTATGGATTTTACGTTTATTCTTTAGATAACGTGGCAAGAAAAGTGCTGTTTGTTAAAATCTGAGTTGAAAGACATTCTTCTTTTTGTCAAGGGATTTATGTTCTTGCATATCGAAACAGccccacaaaaaaaacatgaccctAGCCTCAAATTTGAtagaaataacataataaattaaaagataagGGAAACATGTCTTGATTTGTAGCATTTTCATATCTCAGCTGTCACAGGCAGAATTGCCCTCATCCCTTTACAAACCAGCAGAAATAGTTTATTAATGTTAgtcacactttaaaatgaaaattgattttgtttaaatatacaaacaaaagtgtacatatactatatattctatttttctATGGTTCTGTTCTTATATCAAATTGCTGGAATATTTTTCAGTTcagatttgtttattgttttgttttgttttttaagaaaaaaaaatgtcatcagtATTTCCCAAGTAGCTTGtcaaactaaaaacaagctgacaatttaattttcttccatttgtttttcttattaaagtAATTCCCCAACACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41345 lncRNA downstream 16978 10446435 ~ 10507553 (-) False G27894
TU41344 lncRNA downstream 16978 10484256 ~ 10507553 (-) False G27894
TU41343 lncRNA downstream 16978 10490011 ~ 10507553 (-) False G27894
TU41346 lncRNA downstream 16978 10490011 ~ 10507553 (-) False G27894
TU41360 lncRNA downstream 38460 10484922 ~ 10486071 (-) False cacna2d4a
TU41375 lncRNA upstream 116355 10649898 ~ 10659974 (-) True G27910
TU41414 lncRNA upstream 181087 10714630 ~ 10720284 (-) True G27940
TU41416 lncRNA upstream 181087 10714630 ~ 10716610 (-) False G27940
XR_006250620.1 lncRNA upstream 397054 10930597 ~ 10932401 (-) True LOC122342624
TU41464 lncRNA upstream 592959 11126502 ~ 11259483 (-) False G27974
XM_043236581.1 mRNA downstream 2282 10484928 ~ 10522249 (-) True cacna2d4a
XM_043236584.1 mRNA downstream 40430 10477213 ~ 10484101 (-) False stk38l
XM_043236583.1 mRNA downstream 40430 10477213 ~ 10484101 (-) True stk38l
XM_043236582.1 mRNA downstream 47550 10463761 ~ 10476981 (-) True LOC122342626
XM_043236585.1 mRNA downstream 72724 10448839 ~ 10451807 (-) True fgl2a
XM_043236647.1 mRNA upstream 104240 10637783 ~ 10645759 (-) True napepld
XM_043236646.1 mRNA upstream 108995 10642538 ~ 10645757 (-) False napepld
XM_043236648.1 mRNA upstream 108995 10642538 ~ 10645253 (-) False napepld
XM_043236649.1 mRNA upstream 108995 10642538 ~ 10645253 (-) False napepld
XM_043236692.1 mRNA upstream 142934 10676477 ~ 10685951 (-) False ints13
XR_006250794.1 other downstream 160965 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 167326 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1224352 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1515227 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1583260 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 888526 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 892954 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1481088 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1948377 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1948559 12482102 ~ 12489156 (-) False cpm