RNA id: TU41375


Basic Information

Item Value
RNA id TU41375
length 1692
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G27910
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10649898 ~ 10659974 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAGAGTctttatttatgtctttacaGAGACCTGTCTGGACTGTACAGAGTTGAGAGACATGTGGACACTGACTGTGAAGATGgacatctgtgtgtttttgattaatgaGTGTTGTTTGGTCCTGAATGTGTAGGTTgcccttattttctttttaataagcaaaagATGGCAAACTAAGTAAGTAGTTTATAAggtaataagtgtttttttaagtaaagcaAGTAACTACCTGTCTGTCTAACTAACTTCCTTCTTTTTCCAGTGTGATAAATCATAACCGCTGCTGGAGGTTGTGCTGGAAGCCCCAGGGGGAGACCGTACTTGGTCTCCCCCTCTTTCAGGTGCACCCTTCACTCACTCCACCATTCATTCATATCGCAGAGATCTGGCTGGGACTGAACCAGCAACCTCTTAACCGTGAGGCAGCGCTCGTACCTGTGAGCCACAGATCCCCCTGTTTGAACACTTGAAGGAACTTATACTTCACCCTTCACCTGAAAGTGAGCTGCGGTTTTAAATGAAGCGTCAGATAAAGGCTTTAAAGCTGTGTTCAACACACCGAGGAGGGACTTGAACCCATGACTCCAGAGCATCCTCGGGTGCTACTGATATGTTTTAGCCCCCGGCTCCACTGTGACTTTTGTGGTGTCTGCTGCTGTTTCAGACACTTTGTGGGATAGGATGAAATACGTCAGATTTTTAACAAAGCACTAATGGGATTTGAACTCAGGACTCCAGCAGCGAAACACAACACTTTACCTATTGAACCACTGAGATTTAGTAGTGCACATACTATTTTAGATATATgagataaaatatacaataaaaaaagacttcagtgatacacacattttaaaacaagaattTAATGTATGAAAAACAGCTTTCATCTGAACCAaagactttttgttttctttttgaagtgtaattaaaaatcaCTTAGGTTGAATTATCTTATATTGTTTTCAGGTGTTTTgctgtaaattaaatgttaaagtgaTCATCTGTTTGAACACAGGACACCTCATGCAAAACAGCTTGTATTCAGTTAATATGTTGCACAATTAAGCTGGACATGGCAAAGTTGCTCTTTATTCCCTTttggttttttatatattactataaaatataaaaaaaatgcaggatTTTAACCAGTACTGAGGTTCAAGAATGAGAGGTTTTTCTTGTTCAGCAGCACACAGTGAATCAAATCATTGTCTCACAATAGTTTTTGTAAACACTAAGAGAAAGAGTTTGTCCTGCAGATGCTCTTCGTGTCCACATGGGGGCGCACTGCTATGAACGCTGATTGAATCCGCAAATAAACATAcgatattattacataattgaGAACATGAGACGAAAACACcactttagatttaaaaaagcatCTACTTAACCAGCAGATAAATCAGTCAAAACATCGTCGGAAGACACTCTGTCCCGCATTGTATCTGTGTTTGTATTTCGGCCACGTGGCTTCCAGTTCAAAACATCGGACACTTTTCTCCTCATTTGAGAGCCGATCCGAGTCAGTTAACTGCCAGCGTCCGAGTTTACCTGCTGACAACATTATACCTTTATTTTAACGCGTATAAAGCCCCACACGGACGTCCTCTCGCCTCGACTGTCCTCTTCAATCTAGCGTCGTTTAATGAATCTGCTTCACTTTCTGGCCACAAGAGGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41347 lncRNA downstream 87126 10503634 ~ 10562772 (-) True G27894
TU41363 lncRNA downstream 123476 10524539 ~ 10526422 (-) False dcp1b
TU41345 lncRNA downstream 142345 10446435 ~ 10507553 (-) False G27894
TU41414 lncRNA upstream 54656 10714630 ~ 10720284 (-) True G27940
TU41416 lncRNA upstream 54656 10714630 ~ 10716610 (-) False G27940
XR_006250620.1 lncRNA upstream 270623 10930597 ~ 10932401 (-) True LOC122342624
TU41464 lncRNA upstream 466528 11126502 ~ 11259483 (-) False G27974
TU41466 lncRNA upstream 466528 11126502 ~ 11156744 (-) False G27974
XM_043236647.1 mRNA downstream 4139 10637783 ~ 10645759 (-) True napepld
XM_043236646.1 mRNA downstream 4141 10642538 ~ 10645757 (-) False napepld
XM_043236648.1 mRNA downstream 4645 10642538 ~ 10645253 (-) False napepld
XM_043236649.1 mRNA downstream 4645 10642538 ~ 10645253 (-) False napepld
XM_043236643.1 mRNA downstream 116355 10524531 ~ 10533543 (-) False dcp1b
XM_043236692.1 mRNA upstream 16503 10676477 ~ 10685951 (-) False ints13
XM_043236691.1 mRNA upstream 16503 10676477 ~ 10685806 (-) True ints13
XM_043236690.1 mRNA upstream 505294 11165268 ~ 11213298 (-) True pawr
XM_043236772.1 mRNA upstream 560562 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236770.1 mRNA upstream 560562 11220536 ~ 11275588 (-) False ppp1r12a
XR_006250794.1 other downstream 286332 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 292693 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1349719 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1640594 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1708627 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 762095 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 766523 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1354657 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1821946 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1822128 12482102 ~ 12489156 (-) False cpm

Expression Profile