RNA id: TU41414


Basic Information

Item Value
RNA id TU41414
length 1875
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G27940
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10714630 ~ 10720284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccaGAACGTTTACTGAAATATGGGATTTTCGACATAGCACAAGGGTCaggttataataataataataaagtaacacGATAAACGACGTTGACAGAGCACTTTATTGAACTTTACTgacaaaaataatgtgaaatcataaatcataaaatagtCCAGCAAgcaaagaaatgaaagagatttcatttataatgatattGGAGCTCTTTTGTTGgacatttaaatgcatctcCTGATGGATCCGTCGCTACAGATGACATACAGCCTTGCAGGGTAGCAATTCTTTATTGATATATTGACAATCATGAGGCATACATCTAACTGCTATTAGTAAATAAATTGTGCaaaggaaagaaaggaaaaactattttcattttcaacattcGGTTTATAATGAAACTGGAGCTCTTCTGTTGGACATTTAAACGCATCTCCTGATGGATCCGTCGCTACAGATGACATACAGCCTCCCCAGATCGTAAGTCACGTGCTTGTGGCCATTGGGACACACAAGGAAACCTAACCAACCCGTGCCGATGGGATTCGACGCCGAGACACCggttctaaaaACAAAGACCCCTGGGTGTCAATAGCGAAGACGCTGCCGTCGGTAGCTACTTCAACCATAGACATACTTCCAGAAATCACATCGAAAGCGCTCGCCCCTCCGCAGGAAGCACCCGATACAGACTGTACAACACATCAAAGAACACATCACGTGTTTTCAACTCATTTActgtaattagttttttatttaaagctgcatAGATTCTGAAAACTTAGTGGTGCACTTACTCTTCTGACGAGGATATTCCCTGCGGCGTTCACTCCCCAACAGCTGTACGGCCCACAGCTGTAGTACTTCAGCTTTCCCGCAAGCTGGACCCAGGCGAAATTGCTGGACGGCCCGACGTTGTTAGTATCCTTATTCAAGCAGAAGATATCATCTAGAGGAGTAACGCCAGCAATAATCTGGTCTCCGCCAGCATCCACCTGTTTAAAAGTGACTGACATTAAAATACAGAGAATGAGTGAAAAAGAAAcgcttttatattatatatttaaacatcgTCTTGTTGTACTTACTTGGAATCGAGGCGAACTGGCCGCTCTGAAACTTGAAGACGCTGTTTGATAAATTCACCGCCAGTTCTCCAGCGGGTCCGACAGAAAAGTGCTTCATGATTACGTTTATCCCTCTAAATTCATTCCCAAGCAACAGGAAGACTTCGTTGTCATCGTTCACCCCACCTACCACCCCAACACCggcatcaatctgcttcaggtTCCCCGGGATCACTTCACACTCCAAAGCTATGGGGAAAACATCGTGATATTGATTTTGCTAAATGCTCATATGTTCattaatcctaaaaaaatgaaagcgttCCTAGTTTACCTAGATAATAATGGAGCAGGCAGAGCAGCAGGAGGCACTGACAAACTTTCATCGTTCTTCAAGACAGGTCCTgtttctgaaaacaaatatgTCTGTAAAATTCAGGAAAAGCGTATAATCTTAGTACATCTGTCTTCCTAAATTCCAAACAACGCGGAGTTGCTTCTAGTTACGTAAAACATTGAGATTGTAATTGTAACACCGACGTTGTAGTATTATTAAATCAAGCCAACCTTTTCTATGGATTCAGTGTGATTCTCCTGCGCTCACTCTACAGGTGTTTGAAGACACTGCTGCTTGACACTTAGCTTATATAGCCACGCTTAATTTCCTGGTTCTGATACTGTATGTGGAAAGGGAAGTTGGGCAGATGTTTTAGAAGGATCTCTTCTAAAACACCCCTTACCCGTTTGTCTGCATGCCACGGTCTTGATATCACTGCCGCAGAGTGATTATAACTTGCTGGAAATCACCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41375 lncRNA downstream 54656 10649898 ~ 10659974 (-) True G27910
TU41347 lncRNA downstream 151858 10503634 ~ 10562772 (-) True G27894
TU41363 lncRNA downstream 188208 10524539 ~ 10526422 (-) False dcp1b
TU41344 lncRNA downstream 207077 10484256 ~ 10507553 (-) False G27894
XR_006250620.1 lncRNA upstream 210313 10930597 ~ 10932401 (-) True LOC122342624
TU41464 lncRNA upstream 406218 11126502 ~ 11259483 (-) False G27974
TU41466 lncRNA upstream 406218 11126502 ~ 11156744 (-) False G27974
TU41465 lncRNA upstream 430811 11151095 ~ 11259483 (-) True G27974
TU41512 lncRNA upstream 694816 11415100 ~ 11419364 (-) False ppfia2
XM_043236692.1 mRNA downstream 28679 10676477 ~ 10685951 (-) False ints13
XM_043236691.1 mRNA downstream 28824 10676477 ~ 10685806 (-) True ints13
XM_043236647.1 mRNA downstream 68871 10637783 ~ 10645759 (-) True napepld
XM_043236646.1 mRNA downstream 68873 10642538 ~ 10645757 (-) False napepld
XM_043236648.1 mRNA downstream 69377 10642538 ~ 10645253 (-) False napepld
XM_043236690.1 mRNA upstream 444984 11165268 ~ 11213298 (-) True pawr
XM_043236772.1 mRNA upstream 500252 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236770.1 mRNA upstream 500252 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236771.1 mRNA upstream 500252 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236768.1 mRNA upstream 500252 11220536 ~ 11275588 (-) True ppp1r12a
XR_006250794.1 other downstream 351064 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 357425 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1414451 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1705326 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1773359 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 701785 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 706213 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1294347 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1761636 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1761818 12482102 ~ 12489156 (-) False cpm

Expression Profile