RNA id: XR_006250735.1


Basic Information

Item Value
RNA id XR_006250735.1
length 3394
RNA type transcript
GC content 0.56
exon number 27
gene id ppfia2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11414720 ~ 11573766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGGAGAAAGCATGAGTGAATTGGCCAGGTTTATGTTACGGGGGCTGTGATGAGCGTGGACAGCGGTGTTTGGCTCCTCACCGGAgcagcaccatggacagcgaCAGCCCCGTCAGCCTCAGGTCTCCCCTGCGGGACTCACACAGTCATTCTGCTGCTTTCACATCCGTCCTTGAACAACATCTGTCCGAAGGAGGGACGTTCTAGTTGCACTCAGCAGGTAAAGATGATGTGCGAAGTGATGCCCACGATCAGCGAGGACACGGCGATGAGCCAGCGGGGCTCCCAGAGCAGCGCCTCTGACCCCGACTCGCACTTTGAGCAGCTGATGGTGAACATGCTGGACGAGAGAGACCGTCTGCTGGACACCCTGAGAGAGACGCAAGAAAGCCTGGCCCTCGCCCAGCAGCACCTGCAGGACGTCATCTACGACCGGGACTCGCTGCAGCGGCAGCTCAGCTCCGCACTGCCACAGGAGTTTGCCGCCTTGACGAAAGAGTTGAACGCCTGCAGGGAACAGCTGctggagaaggaggaggagattTCAGAACTGAAGGCCGAGAGGAACAACACCAGACTGCTGTTGGAGCATTTGGAGTGTTTGGTTTCTAGACATGAGCGTTCCCTGCGCATGACGGTGGTCAAACGACAAGCCCAGTCTCCATCTGGGGTCTCCAGTGAGGTGGAGGTCCTCAAAGCCCTCAAGTCCCTCTTTGAGCACCACAAAGCCCTGGATGAGAAGgtaCGAGAGAGGTTGCGGGTGTCACTAGAGAGGGTCTCCGCATTGGAGGAGGAGTTGGCCGCAGCCAATCAGGAGATTGTGGCCTTAAGAGAGCAGAATGCCCACATTCAGAGGAAGGTGGCGTCAGGAGAAGGGGCAGAGGACTTGTTGGAGGGGACAGATGCTCAGAAAGTCCATGGCAAGCGGCTGTCTAATGGGTCGATGGAGTCGGGGGATGAGGCCAGTCAGGTGGTGGAGCTGCAGGAGCTGCTGGAGAAGCAGAACTACGAGCTGGCACAGATGAAGGAGCGCATGTCCTCGCTGTCCTCCCGAGTGTCCGAGGTGGAGCAGGAGCTGGAGACGGCTCGAAAAGACCTCATCAAGAGCGAAGACATGAACAACAAGTACCAGAGGGATATAAAAGAGGTGCAGTATAGTgctaTGTGTCAGAAAGAAGACATGGAGGAACGGATCGTGACTCTTGAGAAGCGCTATCTCAGTGCCCAGAGAGAGTCCACCTCACTACATGACATCACAGACAAGCTGGAGAACGAACTGGCCAATAAGGAGGCGTTCCTCAGACAGATGGAGGAGAAGAACAGGCAGTTACAGGAGCGGCTGGAGTTGGCAGAACAGAAGCTCCAGCAGACCATGAGGAAAGCTGAGACTCTGCCTGAAGTCGAGGCTGAGCTAGCACAGAGGATAGCAGCTCTCACCAAGTCTGATATGGAAGCTAAACTCCAGGACATGAACTGCAGTCTGAGGAAGGCGGAGGAGAGACATGGCAGTATAGAGGAACGTATGAGACATTTAGAGGGACAGCTGGAGGAGAAGAACCAGGAACTGCTCAGGGCTcgacagagagagaagatgaaTGAGGAACACAACAAGCGTCTGTCGGACACCGTGGACAGACTCCTGACGGAGTCGAATGAACGTTTACAGCTTCACCTGAAAGAGAGAATGGCCGCTCTTGAGGAGAAGAACGTGTTAATACAAGACTCTGATAACTACAGGAAGCAGCTAGAAGACTCCATACAAGAAAAGTCTCATCTCTCGGAGGAGATCGAGAAAATGAGATCTGAACTGGATCAGTACCGATTGAGGGCCGGATCCCTTACTGAGCCCACGCTGTCACGGTCTCATCTGGATGCATCAGGAGATCTGCGTTTCTCTCTGGGTTCTCTTGCCGAGACTCAATCGGACCATTATCGCTCCACCAAGGTGATCCGCAGGCCAAGGAGAGGACGCATGGGGCTACGTAGGGACGAACAGAAGGCTAAGTCTCTGGGAGAGCATGAATGGCGCTCTCAGCAACTTGGCGTTCTGGGCGGCCACCCGTTCGAGAGCGACACTGAGATGTCAGATATAGATGACGACGACAGAGAGACCCTTTTCAGTTCGATGGATCTACTGTCTCCTGGAGGACATTCCGATGCTCAGACTTTGGCAATGATGCTGCAAGAACAACTGGATGCCATCAATAAAGAGATCCGGCTGATCCAGGAAGAGAAAGAGTCGACAGAACTGAGGGCAGAGGAAATCGAGAACCGCGTGGCCAGCGTGAGCCTGGAGGGGCTGAACCTGGCGCGGATGCACCATCCTGGAGCCTCCATCACTGCCTCGGCCACCGCATCCTCCCTCGCCTCCTCCTCCCCTCCTAGCGGACACTCCACCCCCAAACTCACCCCGCGCAGCCCTGCCCGAGACATGGAGCGCATGGGGGTCATGACACTGCCCAGTGACTTGCGGAAACACAGGAGAAAGATCGCAGCGGTGGACGAGGACGGTCGAGAGGACAAGGCCACCATCAAATGCGAGACCTCGCCACCTCCCACACCTCGCCAAGTCCGCATGACCCACACGCTGCCTGCTTCTTCGCACAATGACGCACGCCTGACAGCTGCATTAGAGACGGAGGCCAGTGCTCTGAGCAGCGTAGCCAGCAGTCAAGACTCCCTCCATAAACAGCCAAAGAAGAAGGGCATCAAGTCCTCCATCGGACGCCTGTTTGGGAAGAAAGAGAAGGCCAGACTGGGGCAGCTGGGGAAAGAGATTATGGGACCAGGACAAGTAGGGAATGTATCCGATCCTGAGCTTCTAGGTCAGGATATTGCTGTGGGAAAGCTGGGAACGCAGGCAGAGAAAGATCGCaggcttaaaaaaaaCGGacaCGAGTTGTTGGAAGAAGCCAGAAGAAAAGGGTTACCTTTTGCTCAGTGGGACGGTCCTACAGTTGTTGCGTGGTTAGAGcTTTGGCTAGGGATGCCAGCGTGGTATGTCGCAGCTTGTCGTGCCAACGTAAAAAGCGGCGCCATCATGTCGGCCCTGTCGGACACGGAGATCCAGAGAGAGATCGGCATCAGCAATCCTCTGCACCGCCTCAAACTGCGCCTGGCCATCCAGGAGATGGTCTCGCTCACCAGCCCTTCAGCTCCTCCTACATCTAGAACCTGCTGCTGCTCTTCTTCTTTAACACTGCTTGCCCTTCCTGTCGGATTCATCTCTGGGGCCGCCCACATAGCCGTCGGGTAATGTGTGGGTAACCCACGAGGAAATGGAGACCCTTGCCGCCCCCTCCAAAACGAAATCAGAGTCAGAGGAGGGGAGCTGGTCCCAGACGCTGGCATACGGGGACATGAACCACGAGTGGATAGGGAACGAGTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41527 lncRNA downstream 3911 11422069 ~ 11422586 (-) False ppfia2
TU41512 lncRNA downstream 7133 11415100 ~ 11419364 (-) False ppfia2
TU41464 lncRNA downstream 167014 11126502 ~ 11259483 (-) False G27974
TU41465 lncRNA downstream 167014 11151095 ~ 11259483 (-) True G27974
TU41466 lncRNA downstream 269753 11126502 ~ 11156744 (-) False G27974
XR_006250738.1 lncRNA upstream 72638 11618450 ~ 11648423 (-) True LOC122343274
TU41543 lncRNA upstream 107660 11653472 ~ 11654940 (-) False kmt2e
TU41551 lncRNA upstream 139920 11685732 ~ 11688800 (-) True G28029
TU41482 lncRNA upstream 235147 11780959 ~ 11804910 (-) True G27987
XR_006250628.1 lncRNA upstream 248471 11794283 ~ 11820297 (-) True LOC122342677
XM_043237566.1 mRNA downstream 50235 11338341 ~ 11376262 (-) False lin7a
XM_043237567.1 mRNA downstream 50236 11338341 ~ 11376261 (-) True lin7a
XM_043236210.1 mRNA downstream 128259 11296296 ~ 11298238 (-) True rps16
XM_043236771.1 mRNA downstream 150909 11220536 ~ 11275588 (-) False ppp1r12a
XM_043237637.1 mRNA upstream 29363 11575175 ~ 11582303 (-) True hcls1
XM_043237639.1 mRNA upstream 29363 11575175 ~ 11582285 (-) False hcls1
XM_043237638.1 mRNA upstream 29363 11575175 ~ 11582235 (-) False hcls1
XM_043237636.1 mRNA upstream 29363 11575175 ~ 11582190 (-) False hcls1
XM_043237601.1 mRNA upstream 36950 11582762 ~ 11602022 (-) False golgb1
TU41528 other downstream 2414 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1062931 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1069292 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2126318 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 2417193 9004260 ~ 9009304 (-) False klhl42
TU41650 other upstream 468819 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 936108 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 936290 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1771120 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1771120 13316932 ~ 13361938 (-) False tmcc3

Expression Profile