RNA id: TU41543


Basic Information

Item Value
RNA id TU41543
length 1469
lncRNA type sense_over
GC content 0.46
exon number 1
gene id kmt2e
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11653470 ~ 11683862 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTCCCTCCCCTACCGCACCTCACCCGTTCCAGAACATGGGTGGCTTTCAAACCGCTCTACTACACCAGTCTGCACCAGCCAACCCCTCAGTGACCCCATCCACTTATCAACAAACTGTATTACCCCCGCCTCCGCCACCACCTCCCCAACAAACTCCTCCCACACAGACCCCGCCCAACCCGAGCGTCTCGCAGATCGCCGGCGGTAACCGAGGACCTGCCCCTTCGTCCGCCCCCTTTCACAGCACCGGCTACTTGGGCACAGGATGGCACTGACCACACCCACTCAACCCCGCCCCCCCAGACAAACTCACTCAGAGAGGGGTGGAGCTACATCGTGTAACATAGGCAACACAGCAccactgtaaatattttctatgtaCCTTTTCACAAAGGCTAATGGAAACCGGTGGGGGGGAAgggtacattttaaaaaaagataaacgcGAACTGTAAAAGTAGACTTTGTGTAAAAGATGATGGTTAATGAACCCTGGTGCTCATCACTTACCCAGAATCCCCCACACCTCTCTCCTTCCCATAATCTTGTACTGCCATCCTGTCTTTTCCAGacgtcttttttttatttttaatgtttttattcattttaaccgCCCTCTTCCCGTTGAGTCCTTCCCTCTTTCCTCCCGGTGCAGTGCAATGCCATGGGACATTCCAGTTTGCTCCttacctttttttcccccccctgTTCTTCCCGTTTCTCACTGTTTTTcatctgttgtttgttttatctagTGGCTCATTATATAGCAAAAAGATTTTGTATagagaaaaaaagtacagaattattattttttttattcctccaTGTAACAAAAATATCTGTGCACCGCTGCAGAAATTCAGAGGAGACCTTTCTGATAGGCCGCTTCACTGCCCCAGGAGACTGCACTTGTGTGAATGAGCGAGTCTGTGTGCTTGAGTGTCTGTTTTTAAGCGGAAGGGAGCGTGTATGCTTGCGTGCCGCCCGCGTCCGTGCGCATGTTTGAAGTGCGCACGAGAAACGGAAGGCAAATACGGCACAGACAGATGCGTGCTGTTCTCTGTGGCAGCTTTAGAAAGAGAGGTCCTTCCTGTAGGGGGTAAGcggtttatttttgaatatcaATGGTTATTTGTAGaaagtgtaatttaatgtaTAGGTGGTTACTCCAGCTTTCTCCAGAAACAGTTGTAAATATtggcttcttttcttttctatgcTTGTATAATTCGCTCCCATCCCCATTTTGGAATATGGTTGTAAATACAAGCGCTCTTGACAAAAACGCTGAATGTTTCTGTGACTGTAgcactatttttatttcttcctctctggtttatttttttttttactgtttgtgtgtgagtgtatgtgtgtgtgaaggacagAGGCTCACAGACACAGCACTGGTTGGCTATTTTCATGGTTCATTATAATAAATCACTGTAATGACAGTTTTATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250738.1 lncRNA downstream 5049 11618450 ~ 11648423 (-) True LOC122343274
TU41527 lncRNA downstream 230886 11422069 ~ 11422586 (-) False ppfia2
TU41512 lncRNA downstream 234108 11415100 ~ 11419364 (-) False ppfia2
TU41464 lncRNA downstream 393989 11126502 ~ 11259483 (-) False G27974
TU41551 lncRNA upstream 30792 11685732 ~ 11688800 (-) True G28029
TU41482 lncRNA upstream 126019 11780959 ~ 11804910 (-) True G27987
XR_006250628.1 lncRNA upstream 139343 11794283 ~ 11820297 (-) True LOC122342677
TU41559 lncRNA upstream 143626 11798566 ~ 11815305 (-) False G28033
TU41558 lncRNA upstream 158820 11813760 ~ 11815305 (-) False G28033
XM_043237642.1 mRNA downstream 35983 11607310 ~ 11617489 (-) False orc5
XM_043237643.1 mRNA downstream 36096 11607310 ~ 11617376 (-) False orc5
XM_043237641.1 mRNA downstream 36096 11607310 ~ 11617376 (-) False orc5
XM_043237645.1 mRNA downstream 36487 11607310 ~ 11616985 (-) False orc5
XM_043237644.1 mRNA downstream 36928 11607310 ~ 11616544 (-) True orc5
XM_043237629.1 mRNA upstream 36182 11691122 ~ 11710502 (-) False kdm7aa
XM_043237630.1 mRNA upstream 36182 11691122 ~ 11709523 (-) True kdm7aa
XM_043236999.1 mRNA upstream 130406 11785346 ~ 11792920 (-) True cd36
XM_043237927.1 mRNA upstream 175817 11830757 ~ 11840052 (-) True nup107
XM_043236844.1 mRNA upstream 187025 11841965 ~ 11996639 (-) True magi2a
XR_006250735.1 other downstream 107660 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 229389 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1289906 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1296267 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2353293 9271972 ~ 9300179 (-) False uhrf1bp1l
TU41650 other upstream 359691 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 826980 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 827162 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1661992 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1661992 13316932 ~ 13361938 (-) False tmcc3

Expression Profile