RNA id: TU41560


Basic Information

Item Value
RNA id TU41560
length 1505
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G28033
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11798566 ~ 11815305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGGAAGTAAATGCCTTTTATTAGCAAAATAAGGGAAATGAGTGTACAAATGTTCCCCCAATATGGAGAACACACAGACAAAGGTggcagttttttttcaaaatcaatcAACAGTATCGCTTGCCTCAAATGTCTGTTTGCAGACATTatcatattgttttttgtttttttttttttcaatgaaatcCCAACCCCTTCTCAGTCTCTTCATCTCTCGATGGCGCATAATTCTCCGAGCGGTAAGCCATTAAAATGGCGGCCAGTGTCTGATGACAGGTGCTTGAGAGACCGATTTCAAGTCCTGTATGTGGAGCGTCTCAGCGCTTGACAGCTGAACAGGACTCATCTCCATCTGAAGTGGCTGTTTGGTCTACTCTTGTTGCCATGGAGACCCAGAAGGTTTGGACCACCGCTCACTGTTAACCATTAGCTTTCAATACAtcagcgtatatatatatatatatatatatatataatacaaacatacacacacaaaacagatacacacacactctcactctctcgctctctctctctctctctctctctcacacacatgctcacattCGATGCATATGAGGATTTGTGCTCTCAGATTGGTAATATCCAGTATGAAATTTTTTTGACGTTGGAGAGATATTCGGCAGGCAAACCCAAGCAAATGGACAAAGACCGCAGAAACGCATGCGAAGGCACGAGAACCAACAAACCGGATGGAGAAGCACAATCTTCCTCTCTCCCCATAGCAACAACCGCAAAGGCAAACCCCCTCcccaaaaaaataatgtaacattttacaagtAAAGGGGAACTCCTGTGATGcaagaaagcaaaataaaaagaaatccctcgtttaaaataaacaaacttttgTCAGGGTGAAAGTAAACAGCATGGCTGCAACAGCAACGACTGTACGAACATTCGacacaattcatttttaaatgctacgGTTTAAAATTTCCAGAGACGAAAACCATAAATAAAGCTGACAAAGTGGCGTAATGTACAGCACTTGTCCAAGACCAGTTTTCTCCGTACTTGGTCTTGCAATCTTTCTCCAACAAAATGCACATCAAAGCTGGCTTCAATTGcacctaaaaagaaaaaaaaaaatttcatatatatatttttttaaggggATTGCTAGGTGTATGAATTTACAATATTCAGATATACGCGTTTGTTCTGTAGTGTATATTTCATTATTGCTCCAGGGCTAGTATGTGACTTCATCTGCATAATGAACGTCGATTGTTTTGCATGTAAACACACGTGGCACCTAGCTGATTCTCACCAGATACATGCCAGCTTCTAGAAGAGTCCGCAGTCCTTCAGGTTGTTCTTGATGATGACATCGGTCACCGCGTCAAAGACAAACTGCACGTTCTTGGTGTCGGTGGCGCAGGTGAAGTGAGTGTAGATTTCCTTGGTATCTTTCCGCTTATTCAGATCTTCAAACTGACACTGAATGTATGCGGCAGCCTCTTCGTATGTATTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41482 lncRNA downstream 8850 11780959 ~ 11804910 (-) True G27987
TU41551 lncRNA downstream 124960 11685732 ~ 11688800 (-) True G28029
TU41543 lncRNA downstream 158820 11653472 ~ 11654940 (-) False kmt2e
XR_006250738.1 lncRNA downstream 165337 11618450 ~ 11648423 (-) True LOC122343274
TU41527 lncRNA downstream 391174 11422069 ~ 11422586 (-) False ppfia2
TU41622 lncRNA upstream 26684 11841989 ~ 11849922 (-) False magi2a
TU41644 lncRNA upstream 181708 11997013 ~ 11997303 (-) True G28090
TU41640 lncRNA upstream 203304 12018609 ~ 12019001 (-) True G28086
TU41684 lncRNA upstream 332827 12148132 ~ 12155251 (-) True G28117
XR_006250651.1 lncRNA upstream 421340 12236645 ~ 12238137 (-) True LOC122342788
XM_043236999.1 mRNA downstream 20840 11785346 ~ 11792920 (-) True cd36
XM_043237629.1 mRNA downstream 103258 11691122 ~ 11710502 (-) False kdm7aa
XM_043237630.1 mRNA downstream 104237 11691122 ~ 11709523 (-) True kdm7aa
XM_043237602.1 mRNA downstream 129898 11653470 ~ 11683862 (-) True kmt2e
XM_043237646.1 mRNA downstream 197238 11607310 ~ 11616522 (-) False orc5
XM_043237927.1 mRNA upstream 15452 11830757 ~ 11840052 (-) True nup107
XM_043236844.1 mRNA upstream 26660 11841965 ~ 11996639 (-) True magi2a
XM_043236849.1 mRNA upstream 26660 11841965 ~ 11996638 (-) False magi2a
XM_043236845.1 mRNA upstream 26660 11841965 ~ 11996638 (-) False magi2a
XM_043236846.1 mRNA upstream 26660 11841965 ~ 11996637 (-) False magi2a
XR_006250735.1 other downstream 267948 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 389677 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1450194 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1456555 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2513581 9271972 ~ 9300179 (-) False uhrf1bp1l
TU41650 other upstream 199326 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 666615 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 666797 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1501627 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1501627 13316932 ~ 13361938 (-) False tmcc3

Expression Profile