RNA id: XR_006250646.1


Basic Information

Item Value
RNA id XR_006250646.1
length 858
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC122342766
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11989871 ~ 11991884 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGGCTCTAAGGTGGTGTTTGGTTCAGTTGTTAGCGCTATGTGTGCTGTCACAGTGGAGTAATTTGCTCCAGATCCCATGAGCGCTGATGTTGCAGCGAATTGGCTAGCAGTTTCAACAGCCAGTTTAACAAAGTAATCAGCAGTTTCCTTGGCTGTTTCAGCTTCAGAAACCAGTGGCGCAGGCAGAGCTCCTTGATAAACTCGCTCTAGCTGATTATGAGATCCAATGTGGACAACCTGGTATCAATGCTGCGGAATGTGAAACTATCAACTTCTGCTTTGATGGACAGCAGTGTTATGGCAGGGCAGTATAGGTACTCTGCTTCTTCTGTGGAAGTCAACTCCAGCAGTAGCTACCCCTGGACCCCCTCAGGGTGGAGCTTAAACTGGGCAATGGCCAACGTGTCAAAGGATTTGCAGAATGGGCTGAGGCCTGCGAGAGCCAGTGTTTGGGGTGTACATTTTGGAGAGATTTAACCCCAGCCTTGTCATGATGCTTGGATGTTGCTGTGCAACTTCAACCTCCAGTCTGCCCCAGTGGGACCTTCTGGTTGATGGATGCCCTTACCAAGATCATTACCTGACCACATTGGTGCAGGTCCCCCATGTTCATTGGTGCAACACCCCCCAGGTGTTCTATGTTCTAGGCTTCTGCACAAGCCATTTTAAGTGACCTAACATTGGGCACGACAAAGGTTGTCAAAATGAGGTTTATGCTTGACTAGAGGTGGGAGAACTGATTCTCTGATGCATATcagaattgtttgtttttcaatatGCTGTGTTTTACTTCAGGTATGCTTTCACTTATGCCATTTGGAATGCAGTATTAAATGCATGGAACTCGTATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41607 lncRNA upstream 3695 11985352 ~ 11986186 (+) True G28077
TU41311 lncRNA upstream 174576 11803132 ~ 11815305 (+) False gnai1
TU41298 lncRNA upstream 204029 11752668 ~ 11785852 (+) True G27862
TU41284 lncRNA upstream 301061 11685713 ~ 11688820 (+) False G27851
TU41282 lncRNA upstream 301125 11685713 ~ 11688756 (+) False G27851
TU41651 lncRNA downstream 27679 12019103 ~ 12019422 (+) True G28094
TU41652 lncRNA downstream 28072 12019496 ~ 12019766 (+) True G28095
TU41663 lncRNA downstream 156714 12148138 ~ 12155255 (+) True G28104
XR_006250793.1 lncRNA downstream 346521 12337945 ~ 12340101 (+) True LOC122343506
XR_006250638.1 lncRNA downstream 469262 12460686 ~ 12462227 (+) True LOC122342723
XM_043236689.1 mRNA upstream 174576 11796982 ~ 11815305 (+) True gnai1
XM_043236998.1 mRNA upstream 206074 11740732 ~ 11783807 (+) True sema3c
XM_043237652.1 mRNA upstream 298765 11689320 ~ 11691116 (+) False ndufb2
XM_043237654.1 mRNA upstream 298765 11689320 ~ 11691116 (+) False ndufb2
XM_043237647.1 mRNA upstream 337123 11618061 ~ 11652758 (+) False lhfpl3
XM_043236875.1 mRNA downstream 23162 12014586 ~ 12018965 (+) True slc35e3
XM_043236873.1 mRNA downstream 29197 12020621 ~ 12027468 (+) False mdm2
XM_043236874.1 mRNA downstream 30141 12021565 ~ 12027468 (+) True mdm2
XM_043236993.1 mRNA downstream 82279 12073703 ~ 12147286 (+) True LOC122342854
XM_043236899.1 mRNA downstream 178703 12170127 ~ 12267756 (+) True LOC122342787
TU41253 other upstream 298752 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 298752 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 573654 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other upstream 573654 11386130 ~ 11416227 (+) False acss3
TU41106 other upstream 1281009 10707639 ~ 10708872 (+) False LOC122342850
TU41815 other downstream 1159332 13150756 ~ 13154358 (+) True kin
TU41889 other downstream 1314245 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 1314245 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 1322444 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 1331864 13323288 ~ 13530631 (+) True G28249

Expression Profile