RNA id: XM_043236844.1


Basic Information

Item Value
RNA id XM_043236844.1
length 9115
RNA type mRNA
GC content 0.48
exon number 24
gene id magi2a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11841965 ~ 11996639 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTTTTAGGCTTCAGCGAACtgtctttaaaaagcatttaccGAATTGTAACGACCGTTTAAACGCGGTAAATTTAGTTTAgcctgtttattttttgtaacgAAACCCCGAAATTCTTCCTTAACGATTCTTTAATTACTGGTTTGTCTCGTTTGTTGACTTGGTTCACCTTACCGAGCGATTCACAAACGAATTGGTTCAAAAGAATCACACAAAAAAGAACCGAGGCTCCTGCGCGAATCGGACATCGCTGTTACGGTGAGTGTAGCAGTTTTAAGAGACTGCCGTGGATCTGCCGCTGATATGGAGACTCTGACCGTCCGCAGACACCGACCGTGCAACTTTACCGAGGCGTCCACGGCTGCCCCGCTGTCACGTTAACAACTCGGAAACATGTCCAAAAGCCTGAAGAGGAAAAGTCACTGGACTAACAGAGTCCACGAGGTTGTGTTATCCAGGGGTCCGAGCGGCGATCTTGGGTTCGAGCTGCAGGGAGGCGCGGAGAACGGACGGTTCCCCGTCCTAGGAGAGGTGAAACCGGACAGGGGCAAACTGCACCGGGACGAGCTACTTCTGGAGGTCAACGATACTCCGGTGGCCGGGCTGACCATCAGGGATGTGTGGGCTGTGGTCAGACACTGCAAAGACCCTGTCCGACTTAAGTGTGTCAAACAAGGTTCACATACGAGAGGAAAAAAGGGAGGTGTTGTGGATAAAGATCTCAGGCAATATCTCAACCTGCGTTTCCAGAAGGGCTCTTTGGACCATGAGCTGCAACAAATAATTCGGGACAACCTCTATCTTCGCACAGTACCCTGTACAACCAGGCAGCCTAAAGAAGGAGAGGTTCCAGGAGTTGACTACAATTTTGTGACCGTTGAGCGGTTTGTGGAATTGGAGAGAAGTGGAGCTTTGCTGGAAAGCGGAACTTATGAAGATAACTATTACGGCACCCCGAAGCCCCCGGCAGAGCCCAGCCCGCTGCTCTTGAATGTAGCTGAGCAGCTGTTGCCAGGCGCTACACCCAGATCCCAGGGCAAACGCAGACGTAACAAGTCCGTCAGCAACATGGAAAAGGCTGGCATCGAGCCACccgaggaggaagaggaggagaggccCGTCATCAACGGCAACGGAGTGGCCATCACCCCAGAGTCCAGTGAACATGAAGATAAGAGTACGGACGCCTCAGGAGAGATGCCTAACACATGCCCCTCCGAAACCTCCACAGACGCCCCTAAAGAAGAGACAGAACCACCAAAATCGCCTCCAAAACTGGACGAGAACGACGAGTTGGGTCCTCTGCCAGATAATTGGGAGATGGCTTACACTGAGAAAGGAGAAGTGTACTTCATAGACCACAATACGAAGACGACGTCCTGGTTGGACCCCCGGCTTGCGAAGAAAGCAAAGCCCCCCGAAGAATGCAAAGAGAACGagctTCCTTATGGCTGGGAGAAAATCGATGACCCTGTTTATGGAACCTACTATGTTGATCACATAAACCGAAGGACTCAGTTTGAGAATCCAGTTCTAGAGGCCAAGAGAAGattgcaacagcagcagcagatgcAGAGTCAGGGCTTGTCCTCTCTCCCCCTTCCTGCAGTCTACAGAGTGGAGGAGAGCCCCTCCTCTGCCACCTTACCCAGGGCCAGACTGGCATACGTGGGTCCCGCTCCCGAGCGCTCTCATAGTCTCACTGACCTGTCCGAGGCCCCCCTGTACCGGGCCGGTGTGTTTGGACTGCATGAGAAGCCTCTGTTCACGCGGGACCCCACGCAGCTGAAGGGCAGCTTTCTGTCTACAGCCCTGCAGAAAAGCAACATGGGATTTGGCTTCACTATCATCGGGGGTGACGAACCAGATGAGTTCCTACAGGTCAAAAGTGTCATACCGGATGGACCTGCTGCACAGGATGGGAAAATGGCTACAGGAGACGTGATTGTCTACATTAACGACGTCTGCGTCCTGGGCACTACCCATGCTGACGTGGTGAAGCTTTTCCAGTCGGTGCCAATCGGACAAAGCGTAACTCTCGTCCTTTGCAGGGGTTACCCTCTTCCGTACGACCCGGAGGACGCAGCCAACACTTTGCTGTCCCCTCTCGGCCTAATTGATCGCCCTCTGCTGGTCAACGGACGGAATAGCTACGACAGCTACATGGAGTACATCTCCCGCACCGCTCGCCTCGTCGACCCAATGCAAGCGGCGTTGGCGCAGCCTCACCCTGGAGACACCCACCTAGATGCGGGACCGCTGGAGGACAGCGTCTCAATGGCATCTTCAGGAGCGGCTGGAGGAGAGCTGTTAACGGTTACCATGGTGAAAGGGGCGGATGGGTTTGGATTCACCATAGCAGACTGTAATGGAGGACAGCGGGTGAAGCAGATTCTGGAGGCGCAGGGATGCCCGGGGCTGTGCGAGGGCGATTTGATTGTGGAAATTAACCAGCAATCGGCGCTCAcgctgtcacacacacaggtgGTGGAGCTGCTTAAAGAGTGTCCTGTTGGGGCGGAGGCTACGCTGGTTGTGCAGAGAGGAGGAGCAGGTCACTTTTCGCCTTGGAAGACCTCTAAACAGGTTTTGGAACAAATCTGGGATCCTCACAGCAGTCCCACAGCCAGTCTTTCTATCCATGCCCTCCCTCACAGCGCTCCGTATCTGCACTGGCCCTCAGGTCCAGAGTTTGACCTGAGCAAACCTGACCCCTATGACCTCTATGAGAAGTCCAGAGCTATCTATGAGAATAGGCAGCCAGGGCTTCCTCGAGCAGCTCTCCCAGCTGACCCTTCCGCATCAGAGTTCCAGGAGGTGGAGGTCCACTTGCGCAGACAGAAGTCCGGTTTCGGCTTCAGGATCCTGGGCGGAGAGGAACCAGGACAGCCTGTGAGTCCGGAGGCTCAGGAGAAGATCCTGATTGGTGCAATCATCGAGAAGAGCCCAGCAGATAAAGACGGGCGTCTCCGGCCAGGAGACGAGCTGATGTCAGTCGATGGGATCCCTGTGGCTGGAAAACCCCACCGTTACGTCATTGACCTCATGCACGGAGCGGCCCGGACTGGACAAGTTAAACTCACTGTACGACGGAGAATTCAGCCCACAGGTGAACCCTGTCCAGAGAACGGCCGCAGTCCTGGCTCGACCCAGCACAGTTCCCCCAGGAGCGACTTCAACTCCAGAATGTTCTGCAACAACTCCGCCCCCTCTCAAAACTCCGCCCCATCTACCACAGGCTCCTCCCCGCCAGACAATGTAGCCAATCAGAATCTGCAGCCTAGTGATGTCACCATCCAGCGCAAGGAGAGCGAAGGTTTCGGCTTCGTTATCATCAGTTCTCTGAACAGGCCTGAAACGGCGGCCGCTGCTGcCGTGCCTCATAAGATTGGCCGGATCATTGAGGGAAGTCCAGCAGACCACTGTGGGAAGCTCAAGGTTGGAGATCGCATATTGGCCGTCAACAATCAGTCTATCGTCAACATGCCACATGCCGACATCGTCAAACTGATCAAGGACGCGGGACTCAGCGTCACACTCAGGATCATCCCTCAGGAGGAGACGAACAGCACGCCTTCTGCAGGCAGCTCAGAGAAGCAGAGCCCTATGGCCCAGCCCAGTCCAGTTTGCCAACCTAGCACTGTGAACCAGACCGGTGCTGCACCTCCAACCAACTCCACCCCTCAACCCAACTCTGCACCTCAATACAGCTCCATAACTTCAGAAGCACAACCGAGCCCTGTCACTCACACCAGCCCAGCCAATCAGCCCAGCTCAGTGACCCAACAGAACCCGCCCACCCAGCCCTCCGCAGTGCCAGTACAGATCTACAGCCATGACAGCAGCTACAGGTCAGAGGTAAAAGCAAGACAGGATGTAAAACCCGATATCCGGCAGCCATTCACTGATTACCGCCAGCCCCCAGTGGACTACCGCCACCCTCCCGTAGCAGATTACCGACAGCCGCCAACGCTCGATTACAGACACCCCCCACTGCTGGACTACAGGCAGCTGTCCACTGACCCTCGCACCTTCCCCCTACCGGACTACAGGATGCCACAGGATTTTGATTTCTTCACGGTCGAGCTGGAAAAGGGTATGAAAGGTTTTGGCTTTAGTATCCGCGGAGGCCGCGAGTATAAGATGGATCTGTTCGTTCTGCGATTGGCTGAAGACGGACCAGCAATACGCAATGGAAGAATGAGGGTTGGTGATCAGATCATTGAAATAAATGGGGAGAGCACGAGGGATATGACCCACGCTCGGGCCATTGAGCTCATCAAATCGGGTGGCCGCAGAGTTCGCCTGCTGCTTAAGAGAGGCACAGGGCAGGTCCCTGAATATGCAGATAGTCCCGCCCCCTGGGATGCTCACACTACAGCCTCCCCAAGTCTGTCGGAAGTAGCACCACCAATCGACAGCTTATCTAATCCATTAGCTTCTTCTCATGTGTACCCACCCACCGACCCACCTCATATATCGTCCTTGGAAGCTGCAGGTCCAGACTGTTCCCAGGGTCCTAGAGGCCCAGAGACCAGAGCTCTGGAGCAGGCCAGTGTGGGGAAGAGGTCAGCCCTGGCAGGTGGAGTTGGGGGTGGGACCAAGCAGAGGGAGGGTAGCAGGACCAACCGTCGCTCCAGTGGAGGGAAGAGTCAGCAACAATACCTTGATGAACTTGCGGGAGAGCCCAAATCCCACAAAGGCAGCCGGGCAAAGACCAAGGAGCACAGGAGGGAGCGGAGCAACACACCGTCTCGAAAGCGAGATTCACCTAAAACTTCTCCAAATGACACCAATATGAATGGGGGAAATGGATGCCTGGATGGTAGCAACAACCACCAAGGAGCTCTGGTGCCATTCAAAGCCCTACCAAAGGAACCAGAGAAAGGGCAACTGAGCCAAGAGAGTCGTCCCAGCCACAACTCCAAGACCAGCAGCATTGCATCAGGAAGAAAGGCCACAGTATCCCCAGGGCCCTGGAAGATCCCTGGTTCGGACAAGCTACCCAGTACCCTGCGCTCAGCCACCTCCACCATCAGCAGATAACATCTCATCACAATCTCAGTCTCAAGTTTAGACCTTACTTTTGGCCAAATTTTGGACCAATCATTGGCTACGATCCGCCTTGTTTTTTCGACTGGTTGGGCTCTTTTTGATTGCTTTTCACAGGCTTGCTCTACTTGAAAGAGATCGGTTTTAACCTTGACTAGGTACCACCTTGCCACAATCCTCACTAAAGAACTGCTTGCTCTACTTGAAAGAGATTGGTTTTAATCTTGACTAGGTACCACCTTCCCACAGTCCTCACTAAAGAACTTTCCATGCATTTCTAGAcagagcatttttatttatattttattctaagtTATTTTAACAGATACGACACCCACCACCTTAAGAACTGGAAGCATTCACTCCAAAAATGGAACCACGGTAGAATGAGTGATGCATGTAGCGTGCAAAAAGATTCCCAGACTTGTTTGAACTGTTGGGAAAAAGCACTCAAGACTCAGAGATGTACATGCATAGAGAACCACTTACTGAGTCTGAACCACCTCTGGTGGCTACAGCAATTTTTAtacactttcattaaaaaatgaagaataCTGAAGGAGTTGCCTGACATacagtttttgtgtatttgaagaATGAATATGATTGAAAAGATCCTATATGAGCGGACATTCAACTATGAACTCTGCCTTAAAGACTGACCTGCAGATGTCTGTATAAGGGTCGGAAAAATCAATATAGAAATAGATATATTATATGACTACATATATGTGAGACATATTGTAAATATGGTCTTTACACACCATTGTGAGCCCATACTGAAGTACTGATATCATACACAGTGTAAGTTAGAAGAGTGTAATCTAGAATTCATTCCTACTCCACTTTAAGGTGCGTTTCCACTGACAGCGATATAAACTTGAGTGGTTGCTAATAGTGTTCCTACTGAACTTCAATACAGTTCAGGAAACAGATCACATGACCTTCACTGTCTGCGCTGACATCGGTAGTTGCAGCCTCAAGTTGTATCTCTCAAAATCCCAAACTCTCATTAATGATTTATGACTACCAGTTGCTGCAAATCGCTGTCAGTGTGAGTACCCAGTTTCTGAGGGAGCCAGTAGGCTTTGACCTTCTCTTGACTCTCAATCTATTCTACCTTTACGTGAGTACATGAACAAAGCAATCTAAGTTCAAGATGGTTTGGAGAAAATGGTTTGATTAGGGCAGAGTGCCTTATGCCAGGGGTGTCCAATCttgctcctggagggccacagtcCTGTAGAGCTTAGCTCCAGTACTAATTatacctgaaccagctaatcaaggtcttcggGATTACTAGAGACATCCAGGCAAGTTTGTTGTGGCAGGTTGGATAtgaactctgcaggacattGGTCCTCCAAGAGCAGGAGTGGACACCCCTGCCTTATGCTGAACACGTGATGCTTTATTTGAGCTCTAAATCCTAGGCAATGACATCAAGAAAAGACAACATAGGCTGCTATAAATTCATTGGACTACTTGTTCCGTAGAAACTGTGCAAAAGTAATGCCAGATCTGAATGAGTATGCCGTAACCATCCCTGTCTCTGAATGCTGATTGGTGTCTAGAGAGACCATTTTATGTCTACAGTATAGATctatcaatattaaaattcaaagCTATTTTCGTACATAGAAATAGAGGTGAGAGTCTTCTAAAAGAAGTGcagatatttattaatgatatcTTTGAAAGGAGttcaaatgtttgttgagcactTTGTCTTTAAGTggacatgtatacatataaaatgcagTACTGGAAAGAGAATATGCTGTGCATCCGTTATATTCACTGCATAAATTAATTCTCAAAATCCTGCTATGAAACTGTTTATTAGCCTATTCCCCATATAAAAGGTTGTGTGTTGGTAAGCCTCTAACTTCAACAATCAACACAAGCATAGGATGCTTGCTAATAGCAAATTATGAAAGTTCATGAAAGAGGTAATGTATGCTATTGTGccatgcattgtttttttctcagaatgtcATTATCCATCTTGTGCTGCATTTAGAAGTGTCTACATAGACACAGTCTATCAGCCTCTGCTAGCAGGTATGCTAAGATGTTAGCTTGCTAATCGAAAGGCTAACTGAAAACACAAAGAGCCAATTAAAAAGTCACAGcttatgtaatttctttttgcatttatttggttatGCTTTGAAAAGACATTGTCCAGAGTAAATGAGGACAAGTTGAAATCGTTTGAACTTTAAGTGTCACGTCTTTGTGCCACACCCCTTACGAAAATGTACAGTTTTGCTACACTAACCATACCtgatatttgtagtaaaacgcTGGTTATACAAATGGTAATAAGTacaccaaaaaacattttattaccaacttttactacaataaaaccaTGGCTAATTattatcaaaagaaaaaagaggtgGCTAAAAGTCCATTCACACCAAGGTTGATGATGATATCTCTAAAGttgtaataattattctaattatatgagaGTAAAGTAATGATATAAAGGTGACGCAGGGGATCCatgtgatgaaaaataaaatcacagacAGCCAGAATGAGAATCCACGCTTTAAAAATTGAATTAGCTTAGCTTGATTCTTTGCAGCATTGAATTGAATGGATTGGGGAACACTGATGCGATTAATGTTACCGACTGGAATGGTGAGctgtaatagaaaaaaacttcagttttttgggtttttttttgttcgttcaTCTTTCGTAATTCACTTCAGTTGTCATTAATAAATGCGCCATTTCACTAGAAGGAGAAATATGTCGTTTCTGCGCAACTAGTAGCATCCGGCTGTATTTCTGGGCCGACAAAACAACATGGTCTCAACCAACCGCGTCATTTTTAGGGGGCGTGTCTTAATTGTTCATGattttatacagattttatAAACGATAGTGGCAcggaaattacacacttcagtttttaaaagaagaaaaaaacaacaacaacaaacatgtCAAGACCCCGGTGGTGCTTCATTGTGTATTAATCCTGCAATACTGTCAAAAATGTTGTAcaatcttttatcttttttttttttttttttttttaattgatatataCGTGTCAATTCGATGTGAAAAGGACCCCAGGCAAGACCTCGTTCTATCCATTGTCATAATATTGTCTCTATTGTATTCATCTCCCACAGAAATAAAGCACTGACGGATTCCACTGACGCTCTTTGACAGCTGCTGTAGATGACAAGGAGAGCCGACAATGATCTAGTCATTACAAGATAGTGCTAACGTTTCCCTGATAGAGACAAATTAATTGAAGCGATCCAAAAATGAGTGTGCCTCTGTGGCTGTTGCATTCTGAGCGGTACATCCTTCGAAATCCCCCGACAGACGATGCCGTTGTCGAAGCAAACGCGTTTTCCGTAGAGCACCAGCAAAGACTGCGTGCATATGAATGAGGTGGATCCGTATAAACGCTATGATATCTCGGATTaagtacaaaatacatttttgcgaATAAGGAACAAGGCATCTTGAGCTGGCTCGTGAAAAGGCCACCGATGCTAAAGTTACGCCAATAACGCGTCGAGAATGCATTTGTGAATATCATTCTGCAGCGCAGCGACAAGAAAAAGGTGATCAACTTGAGCGGCGTTCGTACAATTGTTCAGGCCGCGTTTCTGGCCTTggggtttctttttctttgtcgtTTCGCTTCGCGCCGCTTCCCACCAGTTTCGTCTCGAGCTTGTCAGATGCTAAAGGGGTGTTGGCTGTACGGTTCGACCTGATAAACAACGAGAATTCAAATGGGATGCTTTTTCGGTAAAGCCGTGGACGCCCGAAAGGGGCTCTGTATCACTGTGTAGAACTGAAAGAACGGCGTGGTTCATCCTGTACAGctgaaaactataaatatgaCACTATGTACTATGACCTAGTCACAAAAACTGTAAGTGAgctatttttatgaaatgcaaCTCAATGGATATATACTTACTTTTGCAGAGCTCTTGTTTACTGTATGATATTTACTGAAATACTGTCAAATAAAACCTTGACATGGTGTAAAGTATTGaaagtaaaa

Function

GO: NA

KEGG:

id description
K05629 AIP1; atrophin-1 interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250628.1 lncRNA downstream 21668 11794283 ~ 11820297 (-) True LOC122342677
TU41559 lncRNA downstream 26660 11798566 ~ 11815305 (-) False G28033
TU41558 lncRNA downstream 26660 11813760 ~ 11815305 (-) False G28033
TU41560 lncRNA downstream 26660 11813760 ~ 11815305 (-) True G28033
TU41561 lncRNA downstream 26660 11813760 ~ 11815305 (-) False G28033
TU41644 lncRNA upstream 374 11997013 ~ 11997303 (-) True G28090
TU41640 lncRNA upstream 21970 12018609 ~ 12019001 (-) True G28086
TU41684 lncRNA upstream 151493 12148132 ~ 12155251 (-) True G28117
XR_006250651.1 lncRNA upstream 240006 12236645 ~ 12238137 (-) True LOC122342788
TU41701 lncRNA upstream 269026 12265665 ~ 12268740 (-) True G28130
XM_043237927.1 mRNA downstream 1913 11830757 ~ 11840052 (-) True nup107
XM_043236999.1 mRNA downstream 49045 11785346 ~ 11792920 (-) True cd36
XM_043237629.1 mRNA downstream 131463 11691122 ~ 11710502 (-) False kdm7aa
XM_043237630.1 mRNA downstream 132442 11691122 ~ 11709523 (-) True kdm7aa
XM_043237602.1 mRNA downstream 158103 11653470 ~ 11683862 (-) True kmt2e
XM_043238010.1 mRNA upstream 283002 12279641 ~ 12371170 (-) True LOC122343504
XM_043238011.1 mRNA upstream 417147 12413786 ~ 12430886 (-) True LOC122343505
XM_043236767.1 mRNA upstream 468973 12465612 ~ 12489181 (-) True cpm
XM_043236805.1 mRNA upstream 495715 12492354 ~ 12536326 (-) False usp6nl
XM_043236801.1 mRNA upstream 495715 12492354 ~ 12536324 (-) False usp6nl
XR_006250735.1 other downstream 296153 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 417882 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1478399 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1484760 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2541786 9271972 ~ 9300179 (-) False uhrf1bp1l
TU41650 other upstream 17992 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 485281 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 485463 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1320293 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1320293 13316932 ~ 13361938 (-) False tmcc3

Expression Profile