RNA id: TU41701


Basic Information

Item Value
RNA id TU41701
length 3023
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G28130
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12265665 ~ 12268740 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAACGCACAATAACGAGTTTATATCGCGCAATTTTCTGGTTTCATAACTCAAAAAGCGTTTTGGCAATaagcgtttttttttcagtggcgGAAACTGCTTCCGTAGAAAGCAGATAAGTGCGTGGAAATCGAACTGAACAAATACGTTTGATGCTCGGGGCCCCCGTAGACAGAAAAGTCTTTTTAACAGCGTCATCGCTGAAGCAGCATGAGCTCTGGATAGAGGTGGCTCTCAATAACAGGCACGGTTAGACCAGGATGCGTTACTGTACAAAAGAGTTTATTGTAAGCATTAAAATCTCTAAGCAGCTCTGCTCAAAACACAGAGGATATTATCTCTAATTTAGAAACAAAAGAGAGCTTTACGTCAAACACAACATGAAGGGAGAAAAGTAAAAAGGCTGGAAACGTACATCGGATCATGTTGATATTACACAGGCAACTTACAACTTTATAGTATCCGGCTAAAGGGTCTTGCCTGGGGATTTCATTAAACACCCAGCCAGTCGTTTGAAAAGTGGCCTATGTTCCCCATGTTTTATTCCTCGAGAGATCCACGCCGCCAACTGTTAACGGGCTCCGAAGTCAAGAGGGTTGTGCACCATTCAGAACTGAATCGAGAACGCCTTGCAAACTGCAGTGTCTGAATTGAGGTAGCAAAGAGGATGAAGAATTACAAATACGAGAGCTCTTACGTCGTAACCGAAATAAGGAGGTACTTCCAGACAACGGTAACTGTGGAGGATGAAAAATGTTAGAAATTAGAAGTATGGCTTCCccgtatattatattatattatagttagCACTGTTTAATTAACTGCATCAAATTTGTTGACATAatatgtatgtactgtgtatatatatatatatataaagaacaaatggacctttatatattaaatatattcaaatatgatataaattatataaatatatacatgtaataaattcaacttttttcatttctaaatatatgtctatgtgtgtatatctctatctacaaaataaatatatacaatacatacacatgtattatgcaaacaaaagctTTAATCTTGGATGCGGTTAATTGATCGACAGCtctaattatattatactatattaaaatTCTGTAGCTAATGATATATTTCGCATATTCcggtgcagaaaaaaaaaaatattcacagatTTAACGCAATTCAAACCGGAGGTTTTTTGAAATTagattaatatacaataaaagaACACGCTAACGTTTGGATGTTAGCCGTGCTAATTGTTACGAAAGCACTGAgcttaatttagaaaaataagtCATGCTAATCAATTGAGTAAATGAGGGAATGCGCAGGGATGAGTAGTTCAAATGGATTGTGTTATGATTCATATTTTGTCGCTAACCTGTTGTCGGACTAATAAAACTTCTCTAATGTCTTGAAATTCTACAAGTGCTTCAATTCTGAATTTTGCCCAAGCCTGAGAGTCATATATAGTAGTGATGGACCAATATATGGACCAGGATGACCAACCGGCTGATCATGATCATTATTAGATTCGCTGATTTGATCGGCCAATTAAATTACGGTTGCCGATAGATATCTTGTGTATATATTGTGTCACATTTGAGCAAATTTCGATCTGTTTTTGCCGTCATTACGTTGATGTTTATCAGGCGTCATTAAATCAAGATCGGTTTACCTCAGAAGCAAAACTGCACAGACAAATGCTTAAAAAACTAAGGAAACCATCTgagtaagaaaaataaatacaattcaagATATATCCTCTGAAAAGCGCTATATTACACAATTTTGCTTCAAACGTAAAGTTGTCTTGCTTAActgatattttttaacattctttaaaacaagTCAGACGTACAGAAACCTGCATATTGGTCAACCACTACATCACTTTCAACACTGCACATTTTAACCATTCATgtccatgtaaaaaaaaaaatatagtaataataataataataataataataataataatggaaaaaaaagaagaacgaTAAAACTATGAAAACCTTTATAATTGGTCTCCATGACAACCATCCGTTTCAAAAGCTCACATTATCCACAACAAGATAACATCTCAGCGCTGCATTGACCTCCTTCCAGCTTATCAATAAATCATCCATGAAAATATCGACACACTGATTATTTTTCCACTCAAACAAACATATTCAAGGACGAACCCTCCAAAACTGGAGAGCGAAGAGTAACACTATGAGAATGCAAATGATCCAAGACACCTGCGGGTTCAACCATCGCCAGcagaaaaacctccaaaagaTGCCTTCTTCGGTTGACCGTCAAACAATAAACGTCATCCGTACGAGAGATGAAATTCAGTCTGCTCTTCTTTATGGCTTTGGAGAGAGAAAAGGCTACATGAATGCTCCTCCTCTTTGTCGTCCTCGTACCGTTCCGATCAAAACACTGATTGTCACATCTTTGTGCTTAATCtaaattgtgtttgtgtgtatatatatatatatatatatatacccaagAAGCGATCTCTTTGTACCGTCACCCGGTCTTCTTCTCAGGGCTCAGAAAAGGTCAAACTCCAGCAAACAGAATGATGGCAAGAAGGAAATGACTTTCATGCAAAATACGAGGGGAAATGGAATGTAAATCGTCTGTCTCTACTGCCATCATGCAATTTCCGACGTTGATTCCTTCGGTGTTTCCAACCGTTCGTTTCGTCCTGGTCTGCGAGGGCCCGGTCGTTTCGAAAACAGCAGGGAAATAAAAGCTCAATTTTGCTGATTCTCGTAGTCAAGAATagttttttacactttttttttttttatttcactcgTATCTCCCCACGCCACTGGCCATGAGTTTCCATGCTAATAGAACGCTCCATGCTTGATGTTGCGTTAACCGTCAGGAGCTTTCCGCAGCCATCGGTAAAACTGTTGCTGGAACAGGACGTGCCATTTTACATTAGCTTGAACGATCTCGACGGCTCGGGCGAACGCGGGCGCCGACTCTCCCCCGCTGGTCAGGATGAACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250651.1 lncRNA downstream 27528 12236645 ~ 12238137 (-) True LOC122342788
TU41684 lncRNA downstream 110414 12148132 ~ 12155251 (-) True G28117
TU41640 lncRNA downstream 246664 12018609 ~ 12019001 (-) True G28086
TU41644 lncRNA downstream 268362 11997013 ~ 11997303 (-) True G28090
TU41622 lncRNA downstream 415743 11841989 ~ 11849922 (-) False magi2a
XR_006250594.1 lncRNA upstream 719967 12988707 ~ 13071520 (-) True LOC122342546
TU41980 lncRNA upstream 720136 12988876 ~ 13071153 (-) False LOC122342546
XR_006250593.1 lncRNA upstream 753383 13022123 ~ 13071520 (-) False LOC122342546
TU42001 lncRNA upstream 908221 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 958960 13227700 ~ 13227947 (-) True G28349
XM_043236853.1 mRNA downstream 269026 11846594 ~ 11996639 (-) False magi2a
XM_043236850.1 mRNA downstream 269029 11841965 ~ 11996636 (-) False magi2a
XM_043238010.1 mRNA upstream 10901 12279641 ~ 12371170 (-) True LOC122343504
XM_043238011.1 mRNA upstream 145046 12413786 ~ 12430886 (-) True LOC122343505
XM_043236767.1 mRNA upstream 196872 12465612 ~ 12489181 (-) True cpm
XM_043236805.1 mRNA upstream 223614 12492354 ~ 12536326 (-) False usp6nl
XM_043236801.1 mRNA upstream 223614 12492354 ~ 12536324 (-) False usp6nl
TU41650 other downstream 249898 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 719853 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 841582 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1902099 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1908460 10355711 ~ 10357205 (-) False zgc:193726
TU41785 other upstream 213180 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 213362 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1048192 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1048192 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 1055785 13324525 ~ 13361938 (-) False tmcc3

Expression Profile