RNA id: TU41879


Basic Information

Item Value
RNA id TU41879
length 385
lncRNA type read_through
GC content 0.40
exon number 3
gene id G28248
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13247769 ~ 13373966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttttttttttttttttttttttttttacACAGAcatcagttttaatttattgatgaTTATAAAGCTACAATTTACAGAATGCTCCAAACAGCAGAACTGGTCAGAGATGGTAAAGGGAACACAAACAAGATGAGGGATTATTTCTCTCCAGCTTTCGGTGGCACCCACTCGTGGATCTTCTTGTGAGTGGTTGAAAAGGGTACGTAGCAGTTAGCCGTGCCACTGTTGTTGAACTGATGAACTGTGGCCAGGAACTTCTTGGGCTCTGGAGGGTGAGTGGTGGGGGGATCATCCGTCATGCTGTGCAGCCAACGGTGCCTGAGAAAAACATCAAAGGGAGAACATTTGAACATTCAGAATTGC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 15786 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 17215 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 19168 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 58002 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 69792 13176963 ~ 13177977 (+) True G28233
TU41946 lncRNA downstream 63970 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 93438 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 136890 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 142664 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 384001 13757967 ~ 13760112 (+) True G28446
XM_043236949.1 mRNA upstream 20445 13190604 ~ 13227324 (+) True sfmbt2
XM_043236950.1 mRNA upstream 20445 13190606 ~ 13227324 (+) False sfmbt2
XM_043236650.1 mRNA upstream 71971 13165740 ~ 13175798 (+) True itih5
XM_043236344.1 mRNA upstream 93417 13150736 ~ 13154352 (+) False kin
XM_043236708.1 mRNA downstream 31963 13405929 ~ 13422500 (+) True vezt
XM_043236709.1 mRNA downstream 31965 13405931 ~ 13422500 (+) False vezt
XM_043236712.1 mRNA downstream 49272 13423238 ~ 13432687 (+) True metap2a
XM_043236713.1 mRNA downstream 49289 13423255 ~ 13432687 (+) False metap2a
XM_043236731.1 mRNA downstream 66670 13440636 ~ 13446821 (+) True depdc4
TU41815 other upstream 93411 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1556640 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1556640 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1831542 11386130 ~ 11416227 (+) False acss3
XR_006250630.1 other downstream 31963 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 508928 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 508943 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 611551 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 611551 13985517 ~ 13991772 (+) False trmu

Expression Profile