RNA id: TU41888



Basic Information


Item Value
RNA id TU41888
length 849
RNA type TUCP
GC content 0.49
exon number 6
gene id G28252
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13305669 ~ 13315684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACGTCTTAGTTCCCTCCTTCAGGGTTATTCATTATTGCAAGTATTTCTATGACAATCTGACTAGATCATCTCTCTTCCGACTATTTTCCTTTCGGCTGGGTCTCAAACACGGCAGAGCACAACTTTAGTTCATACATTTCTGTCCCGGCGATATTTGGATCAGTTTAATATCTAAAACTCTTCCCAGAAGAAACACCTGGTCTAAACACCTGGACTGTATCATGTTGGCACCTGTCAGgaCTACAGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 81885 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 83314 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 85267 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 124101 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 135891 13176963 ~ 13177977 (+) True G28233
TU41946 lncRNA downstream 122252 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 151720 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 195172 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 200946 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 442283 13757967 ~ 13760112 (+) True G28446
XM_043236443.1 mRNA upstream 3450 13306353 ~ 13310418 (+) True LOC122342560
XM_043236448.1 mRNA upstream 11914 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA upstream 11914 13292989 ~ 13301954 (+) False il15ra
XM_043236450.1 mRNA upstream 11914 13292994 ~ 13301954 (+) False il15ra
XM_043236451.1 mRNA upstream 11914 13292996 ~ 13301954 (+) False il15ra
XM_043236438.1 mRNA downstream 5861 13321545 ~ 13325959 (+) False LOC122342559
XM_043236436.1 mRNA downstream 6367 13322051 ~ 13325959 (+) False LOC122342559
XM_043236430.1 mRNA downstream 10681 13326365 ~ 13345061 (+) True lamb1b
XM_043236431.1 mRNA downstream 10681 13326365 ~ 13345061 (+) False lamb1b
XM_043236708.1 mRNA downstream 90245 13405929 ~ 13422500 (+) True vezt
TU41815 other upstream 159510 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1622739 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1622739 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1897641 11386130 ~ 11416227 (+) False acss3
TU41881 other downstream 7604 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 90245 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 567210 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 567225 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 669833 13985517 ~ 13991772 (+) False trmu

Expression Profile