RNA id: TU41906



Basic Information


Item Value
RNA id TU41906
length 525
lncRNA type read_through
GC content 0.45
exon number 2
gene id G28267
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13312934 ~ 13321116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCACGGTTCCTCGCTAGCAAATATATTCCAAAACATTCGCCAGATTCAATAACCTTTGTGTGTAACCTCCTATGTTCTCACCTCAAATGACTAGAAACATTGAGAGGCCTCGGTTTTGGATTGCTCTAACTGCTCCGGCGAGTCCATGCAGTAGACCCTGTGGAGCTTTTCCTTCCCCTTGGCAGTCAGATGTGGTGGAGCATCTGGCACCATGTTCTCACTCAGTAAATCCGTAAGAACTGGTAGAGAGCAGGGGTCCACATGTAGTGACCTAAGCAGATCCTGTGTGTACTGTCCACAGTATAGCCTCAGAGCCCATGTTTTCCCAGCAGACTTTCTGCTATCTTTTATGAGGTCTACAATCACCTGTAATCTTCCATATGCGCCTATACAGTTGTCCATATGGTCAGATGCTGTACCACTACTGAGTGACCGGGTTACCAATATgcattggcttttttttgtttagactCAAAGTGGACTGGTCTCCCTACACTGCAAAAACGTTTAAggtttaaacttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 80951 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 82380 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 84333 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 123167 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 134957 13176963 ~ 13177977 (+) True G28233
TU41946 lncRNA downstream 116820 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 146288 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 189740 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 195514 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 436851 13757967 ~ 13760112 (+) True G28446
XM_043236443.1 mRNA upstream 2516 13306353 ~ 13310418 (+) True LOC122342560
XM_043236448.1 mRNA upstream 10980 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA upstream 10980 13292989 ~ 13301954 (+) False il15ra
XM_043236450.1 mRNA upstream 10980 13292994 ~ 13301954 (+) False il15ra
XM_043236451.1 mRNA upstream 10980 13292996 ~ 13301954 (+) False il15ra
XM_043236438.1 mRNA downstream 429 13321545 ~ 13325959 (+) False LOC122342559
XM_043236436.1 mRNA downstream 935 13322051 ~ 13325959 (+) False LOC122342559
XM_043236430.1 mRNA downstream 5249 13326365 ~ 13345061 (+) True lamb1b
XM_043236431.1 mRNA downstream 5249 13326365 ~ 13345061 (+) False lamb1b
XM_043236708.1 mRNA downstream 84813 13405929 ~ 13422500 (+) True vezt
TU41815 other upstream 158576 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1621805 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1621805 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1896707 11386130 ~ 11416227 (+) False acss3
TU41881 other downstream 2172 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 84813 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 561778 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 561793 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 664401 13985517 ~ 13991772 (+) False trmu

Expression Profile