RNA id: TU41953


Basic Information

Item Value
RNA id TU41953
length 2503
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G28298
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13467404 ~ 13470135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggttTACCTTCTTCTTGAAGGTGTACCACCGATTGCTCCCTTCAAACTGCCACTTTGGAGTCGAAGGGCTCAAAAGGGTTCTTATTTGAGAGGTTATTCCAAGTAACCTGCTTAGTGAACACATGACACTCTTAGAAGTGCTGGTTATGTGTacttctatccatccatccacccattcaaataaatatatgtattcatatttaccCTCCATTTTGAGGTGGTTCATATTTAGGGCGGCGTCTAACCCGCCTCTTATTGCCCGTCGATAAATTTCTCTGACACATTTCTGGAAGAACAAACGCGTTGAAGATTGCGATCTTTCCCGTTTATAGAAACGCTATTTAAAAAGGAGACGGATGCGTGCGGGAGAAAGCAAAACAGACCTTTAAAGCTAATCTCGTACTGAGTAGAGTCGATGGCGATCTTGAATGAACCATGGCGGTCGTTTTGATACGCCGTCTCCAGCTGGGAGCTCTGAACTGCACTGGCCTGGCCTCCGTACCGACACCAGCAGTGGTCACCCCTGTAATACCACAGCCATTCTGTATCCCCCGCGCTCAGACGACGCACCTTAATATTGGTTTTCTGAAGAACTCTCATTTTAGTGAAATCGATCGATACAGCCCTGCGATGCAAACGAGAAAGAGCCAAATAAAAGCAGGCGGCAAGTTCGTTGGGTTGAATAATTCACCTTTAACAAAAGCGTTTCGCGCGTACCCAGCTTGGGTGTTGTAGAGCTTGATTCCTTTAGTGTTGGGGAGTGAATACTGGGCTTCCAGAATGTGATCGTTGCAAATGTTTTTCCAGCCCTTTTGAAAATTCATCTGCCATCTGTAGGGCCCCTCAAATATTTCATCTGTGTgtgattggaaaaaaaaaacgattaggTGGACTAATTTGTTCAACAATCAAACACAtgatgagtatatatatatatatatatataggccatgctctatatatgcattatacgtcatttttaattatacgtATCGACTACTAGAAAAACTACCAGACAATTTGAAATATGTCAtatactatacacacacactgtactaaATTAATgctgatgcattaaaaaaaactgctctttgaaataaaatgacacacattatattaaaatcccaatttaacaataaaaaacaggTTTCGGGATGAATCGCACGAAGCGCGTCCTAGAGCTAGCTAGGATCGCAAATACTTAATTTGTAGATGGGATTGAATTGTTTGGTGGAAACGGATGCGTTCACTTTTTATTGAGTTTAGTGCATGTGTAAGTCACGGGTGCTTTCGGGCTCCTGTTCACACATACCCTCAGATGAGGATCTGCCCCGTCCTGAACTCCGACTGTTGTGGTTCAGACGACATCCGGCACCGAACTTGCACGAACCCTTGAGGAAGTCCTTGCATATGTGCACGTTCTTACACTCATCTCCGTAACGACACTTGCCGCGGTTGTAATACGTACAGACGTTCTGCTTGAACACAAAGCGCAACCGAGTAAGATTATGTTCAtcggagaccagaacacctagatgcgcccccgtggacagatcaccggatcctgatgcacacacacacacacacactaagtcatttacgcTATCTGACACGGCAgggtttaaaattgaactggaggttaagtgctgggcgtccggccagaggagaactggtctggtttctcccaaggtttctTTTCcaccattctgtatggatggggtttgggttccttgccgctgtcgcctctggcttgcttaacTTCTAGCGACTACCGTCCAATTGATTACAGAAacagtctctgcatttaataacaaacttaTCAAtctcattatacatccctatcactgcattcttctgctttataccgTGCAAGCAAGCCGtgctgttaaaagcgctatataaataaaaatgatcgaCTACTGAGCTCCAGCTGCATTCACTTTGAATCAAAAGGTGTACCTCGATAGATATTCCTCCATCATCTTCGACGCCAGATCCAGAATCGTTTTCTGCCTCGGAGTCTGTGTCGCTAAACTCTAAGGAACTCTCATTAGATAGTTGGTAGCTGCCTTCGTCTGGGAAGAACGAAATATGAGGGCAATGGGAATTAGTTACACGGTCTGAAGAAAACGAAAACGTATGCAGCGTTGGCTAGGGCGGAGTAACTTCACTTATCGACTTTTAAAGGGGTTCGTATGCGACCCGGGCGCCGGTTAGCGTTGCGACAACATGCCCCCGACCCGTTAAAAACACTCTTCGAAGCAAGCATTCCCCGTGAAATATTCACATTAGTAAAACAAGCGGTCTTCAGAGTGCTGACATCGAGAAACAAAGGCTGACGCTTCAACCTAGAGAGCGCTGACCGAAACAAAGATCACCACGCCACTTCCCGAGCACGCGGTCTTTTCTTCTTAGGCTAAGTAGGCTTACAGACAACTCGCATGCTGTGTTTGAGCCAATTTTGCATTTGACGACAGGATATAGGCTATTAAACTCACCCGAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41946 lncRNA upstream 27382 13437936 ~ 13440022 (+) True G28295
TU41879 lncRNA upstream 93438 13247769 ~ 13373966 (+) True G28248
TU41906 lncRNA upstream 146288 13312934 ~ 13321116 (+) True G28267
TU41894 lncRNA upstream 235421 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 236850 13230162 ~ 13230554 (+) True G28255
TU41976 lncRNA downstream 40721 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 46495 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 287832 13757967 ~ 13760112 (+) True G28446
TU42214 lncRNA downstream 357890 13828025 ~ 13828537 (+) True G28486
TU42246 lncRNA downstream 521888 13992023 ~ 13992800 (+) True G28503
XM_043236729.1 mRNA upstream 8509 13446957 ~ 13458895 (+) True scyl2
XM_043236730.1 mRNA upstream 8509 13446957 ~ 13458895 (+) False scyl2
XM_043236731.1 mRNA upstream 20583 13440636 ~ 13446821 (+) True depdc4
XM_043236712.1 mRNA upstream 34717 13423238 ~ 13432687 (+) True metap2a
XM_043236713.1 mRNA upstream 34717 13423255 ~ 13432687 (+) False metap2a
XM_043236775.1 mRNA downstream 27605 13497740 ~ 13501524 (+) True tnni1d
XM_043236774.1 mRNA downstream 27745 13497880 ~ 13501524 (+) False tnni1d
XM_043236995.1 mRNA downstream 53815 13523950 ~ 13530743 (+) True LOC122342856
XM_043237863.1 mRNA downstream 64989 13535124 ~ 13629281 (+) False iqsec3a
XM_043237861.1 mRNA downstream 64992 13535127 ~ 13632058 (+) True iqsec3a
XR_006250630.1 other upstream 33798 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 151720 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 151720 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 151720 13313868 ~ 13315684 (+) False G28252
TU41815 other upstream 313046 13150756 ~ 13154358 (+) True kin
XR_006250632.1 other downstream 412759 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 412774 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 515382 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 515382 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 707329 14177464 ~ 14184260 (+) False tbc1d22a

Expression Profile