RNA id: TU42028



Basic Information


Item Value
RNA id TU42028
length 226
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G28350
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13229094 ~ 13229319 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cagcgacattgttttttttttcatactactCTGAGACCGTGACCTCACTCACAATCGCTAACTTTGCTAACTTTACCGAATATTAGCGATAAAACGAAGAAAGTGCCGTGAAGCTGAATAAAATAACGTACGCTTTCACATACAAGTAAAAATAGGCATcgattcgatttttttttttttaattaggctaCAAAATAATCGACTAAGTTGTATTCgttgatgtaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42027 lncRNA downstream 1147 13227700 ~ 13227947 (-) True G28349
TU42001 lncRNA downstream 51110 13176961 ~ 13177984 (-) False tmem110l
XR_006250594.1 lncRNA downstream 157574 12988707 ~ 13071520 (-) True LOC122342546
XR_006250593.1 lncRNA downstream 157574 13022123 ~ 13071520 (-) False LOC122342546
TU41980 lncRNA downstream 157941 12988876 ~ 13071153 (-) False LOC122342546
TU42033 lncRNA upstream 13187 13242506 ~ 13245388 (-) True G28353
TU42039 lncRNA upstream 21332 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA upstream 21332 13250651 ~ 13252034 (-) False G28359
TU42067 lncRNA upstream 82554 13311873 ~ 13319748 (-) True G28377
XR_006250599.1 lncRNA upstream 114407 13343726 ~ 13344257 (-) True LOC122342564
XM_043236651.1 mRNA downstream 42204 13177020 ~ 13186890 (-) True tmem110l
XM_043236342.1 mRNA downstream 64971 13152421 ~ 13164123 (-) False itih2
XM_043236341.1 mRNA downstream 64971 13154146 ~ 13164123 (-) True itih2
XM_043236345.1 mRNA downstream 78388 13146654 ~ 13150706 (-) True atp5f1c
XM_043237035.1 mRNA upstream 38756 13268075 ~ 13275467 (-) False pfkfb3
XM_043237034.1 mRNA upstream 38756 13268075 ~ 13275381 (-) False pfkfb3
XM_043237036.1 mRNA upstream 39215 13268534 ~ 13275474 (-) True pfkfb3
XM_043236447.1 mRNA upstream 51864 13281183 ~ 13301329 (-) False rbm17
XM_043236444.1 mRNA upstream 51864 13281183 ~ 13301329 (-) True rbm17
TU41785 other downstream 739938 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 739938 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1213327 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1683282 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1805011 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 87613 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 87613 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 95206 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 182305 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 463626 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile