RNA id: TU42094


Basic Information

Item Value
RNA id TU42094
length 1395
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G28397
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13411624 ~ 13432703 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATTTagaccttttttaaaaaaaaaaaaaaacaattcggGGAGTTCAAAATGTAATAGGTACTAGATGAGACAGCCATTTGATATCATACAAATaccaaaaaaactgtaaaagctGTGCGCATTACGGGTTTATCTCCTGATGAATTAGTTTTTCTCGCGAAAGCCCTTCGGTGAGGTGTAAAGCCAAGCAGCCAGACTCTTTACATTCTCTCATTCACTGTACAAATGAGCATAAAGGCTTTATCTCGCTCTCACTTCGGGCACCGACTCGTACCCATGCATAGTATTTTCATGCCTTACTTAACGCTGAGTATATGCTGCGCGttcgcagcagcagcagttcgGGGTTTTAAACTAGTTTAATCTTTTTGAGAACGCCTATATGCGTACGTGTTTGCGCGAGACCGGAGTGTGGGCGTTTTACGCGTAGGTACGTCTCAGTAGTCGTCCCCGCGACTCACGACTTCCTTGCACGTAGGTCTGAGCAGGATGGTGTGTTCGAACTGAGCCGTGTGCGAACCCTTGGCGTCGCAGAGCGGGGGGTACGGGTCGATGATGCCCAGGTCGCACAGGTTCTTCAGGGCCATCAGGTACTTGCTTTCGCCCAAACGGTCAAGCCAGCGGCGACAAAACGCAAGGGTACCGAAGTTCTCGTTCACCACGTTTAGCAAGTGCTTCGCCCTGGGCAGCCTAAAGTTGGGATAGATACCGAAGTCACAATGGGCTCACCAGATGTCAATCATAGTCATTCCAGGTTTGATCCAGCTCCTTACATACTGCCGCACTTGTCGATGAGCTTCGGCCGCCTGCCGGAAGTCATTCCACATCTCCTCGTTGGCTTTATCCATCACTTGCTTCTCATCGTTGCTCATTCTCCAAGCGGCGCTACGCCTGGGAGGTCCAAAAAACACTTTGCGATGTAGCGAGTACATTTATTTACCTTGAGAATAACCATCATCATACAGTCAAAGCCAAATTTATTCAGACACCTTCAACATTTTGCATCACAGTTATAGTTTAGAAAGTTGTATGACAAGACCTCAAGAGTTTAACTGCGTCAGAACAAATTCGTTTTCATAAAGTCAGATAACTTTAATAGAAAGGTATGTGACAGAACATGGTCAGGACAAAGtgacaaattacatttttgtctatttttttcctctatttATACTTTATGAAGAATTTTGGGGTATAATATGTCgcagtttactttattttgctatCCTCACTTACATAAATGAACTATAGTGTCCTTCACccactaggaaaaaaaaaataattcattaaaaattatatcTGGTGTCTGAATAATCTTTGACAGTTTAAACACTGTTAGAGATGCATCTGTAAATGTTTCTTCAAACCATTATTTGCTATGGAAAAGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250599.1 lncRNA downstream 83771 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 108280 13311873 ~ 13319748 (-) True G28377
TU42039 lncRNA downstream 175994 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 175994 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 182640 13242506 ~ 13245388 (-) True G28353
TU42147 lncRNA upstream 177547 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 388027 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 434108 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 436753 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 447362 13880031 ~ 13880847 (-) True G28568
XM_043236707.1 mRNA downstream 24812 13384588 ~ 13403216 (-) True fgd6
XM_043236711.1 mRNA downstream 43582 13376174 ~ 13384446 (-) True nr2c1
XM_043236714.1 mRNA downstream 52685 13373631 ~ 13375343 (-) True ndufa12
XM_043236432.1 mRNA downstream 66091 13345955 ~ 13361937 (-) True tmcc3
XM_043236433.1 mRNA downstream 66092 13345955 ~ 13361936 (-) False tmcc3
XM_043236710.1 mRNA upstream 640 13433309 ~ 13440103 (-) True usp44
XM_043237130.1 mRNA upstream 28374 13461043 ~ 13465673 (-) False si:ch211-244b2.3
XM_043237129.1 mRNA upstream 28374 13461043 ~ 13465672 (-) False si:ch211-244b2.3
XM_043237132.1 mRNA upstream 28374 13461043 ~ 13465671 (-) False si:ch211-244b2.3
XM_043237131.1 mRNA upstream 28374 13461043 ~ 13465671 (-) True si:ch211-244b2.3
TU42098 other downstream 5489 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 66090 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 66090 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 66090 13324525 ~ 13361938 (-) False tmcc3
TU41785 other downstream 938872 12481920 ~ 12489156 (-) False cpm
XR_006250767.1 other upstream 260276 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 260511 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 382905 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 542688 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 736753 14169422 ~ 14176725 (-) False cerk

Expression Profile