RNA id: TU42214


Basic Information

Item Value
RNA id TU42214
length 513
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G28486
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13828025 ~ 13828537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaacaatgtttattttttggcgaagtgttcctttaagaagaTCCACGTTGATCagaaacatttggaaaaaaacgtGTTCCGTAAGACTTCACAATGGGTTAGTCATGTCTACCTGAGGCTCTGCAGAAAGGACGTCTCGAAGCTGACGTCAGATCTCTTTTCAAGCTCTTCTGACTATGAAGTTTGCGGAAGGAGAAGCCCGTTTGTGATCCTGCATGTCTCTGCGGCCGCTGTTTTTTTGCCGATTCCCCGGGGGCCACGTTTCCTGTTCTTTTGTGCCCTGTTTTTCGAGAGGTGTGCGTAGCTGGATTAAGAAACTGATTGAAATTAGAATGCTGCCATCTTGTGGAAAAGGCGCCGGTTTTCCGATGGGCGCCCGGCACGGGCTCGGAGTTTCTGTGATGGATAAGCGAGCACTGAACTGAGACGTCTCGGTAAGAAAAAGCTCTTGTTTGCGTCCCTGTTTCCAGGGTTACCGGGGGAGTCCCGTCACGCCTCTGTGCTTCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00983 Drug metabolism - other enzymes
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42167 lncRNA upstream 67913 13757967 ~ 13760112 (+) True G28446
XR_006250763.1 lncRNA upstream 307568 13516630 ~ 13520457 (+) True LOC122343375
TU41976 lncRNA upstream 314432 13510856 ~ 13513593 (+) True G28312
TU41953 lncRNA upstream 357890 13467404 ~ 13470135 (+) True G28298
TU41946 lncRNA upstream 388003 13437936 ~ 13440022 (+) True G28295
TU42246 lncRNA downstream 163486 13992023 ~ 13992800 (+) True G28503
TU42247 lncRNA downstream 163526 13992063 ~ 13992800 (+) False G28503
TU42249 lncRNA downstream 163526 13992063 ~ 13992831 (+) False G28503
TU42486 lncRNA downstream 980060 14808597 ~ 14809661 (+) False G28667
TU42487 lncRNA downstream 980060 14808597 ~ 14809661 (+) True G28667
XM_043237658.1 mRNA upstream 961 13789644 ~ 13827064 (+) True LOC122343279
XM_043238002.1 mRNA upstream 154316 13669773 ~ 13673709 (+) True LOC122343498
XM_043237998.1 mRNA upstream 158392 13665659 ~ 13669633 (+) True LOC122343497
XM_043237999.1 mRNA upstream 158392 13665659 ~ 13669633 (+) False LOC122343497
XM_043238001.1 mRNA upstream 158392 13665659 ~ 13669633 (+) False LOC122343497
XM_043237657.1 mRNA downstream 3595 13832132 ~ 13842547 (+) True LOC122343278
XM_043237656.1 mRNA downstream 18755 13847292 ~ 13878723 (+) False LOC122343277
XM_043237655.1 mRNA downstream 18756 13847293 ~ 13878723 (+) True LOC122343277
XM_043236725.1 mRNA downstream 54370 13882907 ~ 13951498 (+) False LOC122342701
XM_043236721.1 mRNA downstream 54375 13882912 ~ 13961098 (+) False LOC122342701
TU41881 other upstream 297394 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other upstream 394419 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 512341 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 512341 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 512341 13313868 ~ 13315684 (+) False G28252
XR_006250632.1 other downstream 54357 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 54372 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 156980 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 156980 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 348927 14177464 ~ 14184260 (+) False tbc1d22a

Expression Profile