RNA id: TU42310


Basic Information

Item Value
RNA id TU42310
length 5697
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G28545
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13820696 ~ 13827052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttattattatctCCAAGTACATATTCAAGTTTTCGTAGAATATAAATCTAgcaaaacatttacagcaaCGGTAGTCAAATACTGTACAACACAACATTTGTCCTCACTAGTGTCCATCTACGGTATAAACGCCGCTTTTTGTttcacatacaaaaacaaacaaacaaaataaatacacccatacatttaaaaacggATGTGTTCGTTGGTAATAACACAAATGGCCGTCCGCGTTGGAGCACGTCCCAAGTACAATCTAAAAGTCAAACACATCTGATACACATGAAACTGCTCAATAAAACTTCGAAATTATATCATACATGTCGACCGAAGCTCGTTTTCTTGAGTAATGCCTTTATTCGGACTCTAGCTGAAGCAATGTGTTTTACGTTATAGATTCAATTGGTggcttaaaggaatggttcatcAACTATCTCTTTTTTTGGAGATCGTCTTTCCCCTGGTTACCGCACgcttttattacatataaaaggGCAGCTTGAGCATTCTTCACAACCTCTCcttttacgttttaaaaataCGTTTTGGAACCAACTGATCGTGGGTAAACGAGGACCAAGGTCCGTTTCCGTCTGTGGGTGAACCATTCCTATTAAAGTCTAAACTGATATATTGCCGAACACCACGCCAATTTAATTTGTGCTTCTCTCAACCAAATTAAATTTTATCCGATGGAATATCAAATTACGCGTAATCATGTATCTAAACGAAACGCACAATACACGAGACATGATGTGCACGATTATCACTGGACAGAGTGAAACCCTTTAAACGGGAACTTGAGTCAACGTTATTGGTTGTTTTCACAAGAGCCATCATGGTTTCGATAAAGCTACAACCACAACATAGAGACTTTCAAGGCTTGGCGCACCTTGACGTGTATTTCTCTATTCGTATACTTACAAAGCAGCACAACAGAATATCGGATAATACAATGTACTTGTCAAAACGGTTATCCCACACTGTTTCATGGACAAGACCAATGCGGTGACGTTTGTACACTAGGCTATAAGGAAGACAAATCAAAATGACGATGAAAAAAAAcgtgtaaacatttaaattacgtttaaaaagcaaatattaaagaTTTTGGTAACAGTTTAGTAAAGGAACGGTTCTCACTGTCAACTAgtcgcttattagcatgcctattattaacatatcgtctgtttatttagtacttataaagcacatattataCATGACCATATTGTGCATATAATACCTAAtgactaccttactattaaaaagcagcaaattaggagtatTCGACAAAAGCTGCAGATAATCGTTGGTTCGTAGCGAAAATCGgaccttgaaataaagtgtgaccaaaactttaaaatgaattagtcttaaaaacaacaataatgatGTAAACCgtcaaaagtaaaaattgtgaagtatttttaaGGCCACACTACACTATCACAGGGAAACGCAGAAAGCTACATATGACGTTTCGTGTCGATAATCTTTAATCCTACAAACATGAAGGgtcaaattacaaaataaactacTGTACTTCAAAAACTAGACAGTGATTGTACATTACAAACAAGCAATGGGATTTGCTACACGTTTTCAAAGCCTTGGAGATTTTACCGAGCAGGCGAGAGGGACgtgaaaatgctatttattcgCTTGTGTTTGATTATTGTTCATATTTCAGGAGTTACTACACTTCAATCACTTGGTGGGGATTATTTGTAGACAAAAATTAGACACATGGCAAAAGCGTGCAAAACTAATATTGGCAATGGGTTGCaatttgaaatataaagaaaaattgaTTCGTTGGATATTTTTGATCTGCATAATTCCATTAATGATTCTGTGAAAAATACTACTAAACGATGAGTAGGCGCGTCCAAACTTTTGACCGATAGTGTagcttgtatatatatttctttgtaagtgtcaaatataaaatttgCATTGAGTTCGCACTTAGACATTACATTAAGAAACCAAAAATATCcttctgcatatatatattattgaactTACAGCTAACATctcattttacataaataagCAGAGGATATTCATCTGACAGTGGAGAAACGAGCCAGTAGATCTGCATGTACTGTGACGCAAAAACATACTGACGATATATTATAAAAGCTGACTTGGCActgcgtgtttgtttgtgtgtgctctACAACCCTGTTCTTTCCGTCGCGATGAAGAGAGGCTCAACCTGTCCGATACGGTGGGCGGATCTGACGTCAGGGTTGAACGCCGCTCAATCGATACATTTTCATCCACGTTTAACCAACCCAGAGGTTTCGCACGAGTTATTCGACATCCGACGCGTCGTTGTCTGATAGGTGGTAGTTTGACCCTTTAACCCGGATGTATTCCACTTGCCGATCCTCATCAGAATCCGAGATCCCGCATGAGCAGAGCCGGTTTTCAAACAAGGACTCGATTTCTTCCAGCCGCCTTCCTTTAGTCTCGGGCAGGCAGCCATAAATGCAGAAGAAACCAGTTAGGGCTAAACTGGAATACAGGAAAAACAACCGTAGTAAGTCAGGTACTGGGCCATATGGAGGAACGTTAGAGACACCAGCACATTAAAGGTCCAGTTTACTCCAGCCGAACAAGCATTGCCTGTGCTTCTGGCCCAAAGAGGGTAGATTTCAGAATTAACTGTCCATGGCATTGGTCCCATTCCTGTCAAGAGGCGAAAGCGTTTTAAATTACCGCAATGCAATGTCACAATGAATACATGGCTGATATAATTCACTCAGGGCAACCTCTGGTTGTGTCTTGCTGAATGGCACAGTGGTGATGGATTGTATGGATAATCACAAACAGATATCATCTTACCCGGGGCAAAAAATGCGAGATAGAACACCAGTCCCAGGAGCACAACCCATGAATAAGATGTTGGGCAAAAATTATAAGCCCATATACCACTATCTGGCACACGTGTGGAGTTGGAACACCTGTTAGAGTCGAAACAAACACAATGAATTTTACAAGGtaattgaataaatacagtatttaagcgtcactattaacaaactaaaatgtgttcgaaaatataaaatacaagtaTTGAAACACCACGTTTTGAAGGACATGACAATACATTTGAGATTTTACGTATCGGATAACTTATATGGTTTAAcgtagaataaataaaaacatattatgcCCAAATTTACACAGAACAAATCAAGTGCTTGCGCATACAGAGACTCTGTTTCAGTGGTGACTCACTTGCCCCACGCTGCTCTCTCAGTGGAGGCCGGATTGACGGGCACACAGGAGGAGGCAAACACAGCAGTGCTGTTTTCCTGATAACAGTAACCACAgctagggtctaacatacaggGCTCGCATGACCTGAAACACAAAGTAATGTAAGAGCAAAACAAAcgactcaaaaaataaaactcaaccAACAGACACTGAATTCTTATCTGAATTCAACACAAATCAAAATACACACTTCTAGAGCTCCTTTTAGGCATGACTCATCAGTGAGCATTGTTCTAAACAAACAAGCCAAAAAAGTTAATTGCATTCGTAATCTTCCATCAAAACATAAGAATTTCCTCCACAATCTGGAACAACTTACATGTGCCTCATGGTGTCATGCACAGCATGTACAGCCAACTGGAAGCCATTTCGGAGGGTTCTGGGAGTGTCCCTCCAGTTCCTCCTTGCGCAAAGTAGCAGATACTCATCGTACTACTTGGCCGTTTCCCTATTATATGGCCCTGTCCAGCTCTCCTCGTGCTCTCCTCAGATTTATCTCCTTCAGTATGCAGGGAGTCTCACTGAACTTCCTCACGATGGCATGTATGGACGTGCCATCTCGGGAGGACCTGGACTCCGCAACCTGATTGGGTTGCAGGCAGCGGCTCATGGCGCAAGTAACActcaggaaagaaaagaagagagcgCTGTCTGTGGCCACCACCTGCAAGCCGTTACCTTTTTGAGGGTCGTCTTCAGGTGTTGCCAACTGCTTTCGGTTGAAAGTAGCTAAAAACCAGCTTGTTAGGAGTGAGCAACGTGCATTAACTTGACATGCTCTCTACACAGTCCCCCCTAGTAAGGGGAATCCGTCTTTCGCACATACAGACCAAACTTACTAGAGAAGTGTGAAGTGCGACATGATAATTTCTCTACATCTCACACACTTTAATGCACTTTGTACGGAACACATACACTCGTTTCGAACTAGAATCATGGAATATCCGGTGACGTCCACTTTGCAGGTCACTTGCAGTCAAATAAAACATACGAAATATGCAGAGCAGGGAGGAACGCTGCCCTATTCCCTTCAAAACGTTTACCCTTCCGTATTGAGAGCATGAATGACTATGCATGTTTATGAAGGATCCCATTAACATGCACGTCAACATGTATTTCTTATTCATCTTTAGAAGTCTCGGTCAATGGGTGTTGCACAGCGGTTACAGTGAGTCCATTAAACACTGTATTCCGTTATGTAAGAATGTTGAAAGGGCTTTCGAGACAGTCTATGCACAAATTGGTTTGCTGCTGTGACGACAGCGCAGTCATTACGCATCCATTAGCAGGAAAGTAAACATGCTTTGTTTCGGCGATCTGTGTACGGTGAATTGGATGACAGCGTAAGAGTAAATTAGGACGGAGAGAGAGGCCGCGCTCTTTCTGACTGGGAGGAGGGCGTCATTGTTATGAGGTTACACACTTCAGACTCTCTATTAGTGTGACATTAAGGAACAGCGAGCAGCTTGGACCCGCTAACACAAGCAGTTATTGCTGCAACGTACACACCAACCGAACCAaacattaaaattgattttcaCTCAGGTTGGAGACCAATAAGCTGTCTGTTGACTAAAGCAAGAAGAATTAGAAAGGGTCTGATTTCACAATTAGAGTGCTGGCAATGACACTTCACTGGAATCAACGGCTAGCCTTTTTACTTCCCTGGTATTCATATAGTGCATACGTACAAATTGAATTCAACAGTGTCTCTATAACCTCTGAGTGTCCATGTGCATCTCCCAGCCTTGATATTTAGTTTATTCCAGTATGAATCCCCCAGATCTCTACAGCAGAGGTCGTGAAACTTTTTCACGTTAAAGGCttgttcacaccaagcacgataacTTAAGATAATGATAAAAACTATATTTGCGTCCGCACCAGTGAGCAATATCGTCCGTTTAATCTCAGCTCGTGCATGTCTGCCGCTTTGAATTCTCGAGCTCCTGAGAactgtgattggctgtcagCGTTTGTATCATTCATCCGCTGGAAAGAATCGTTCTGAAAACGATCCCTTGTTCTTTTGGTCAACCAACCTCCGCAGAAAAGCAATGCTGGCAATCAGCTGGCTGACAGAGGAAGTCTTGTATATTTAGGAACTCTTAGGTGCTCTGGGGGACTGTCTGTTCAGTCACTTTTGATACGTGTTAAATTACAATACACCAGATAACAAGACAGCTGTCACTATATGGTGACCGAGTGTACTATATCTTATGTAGTGTActcatgaattatttatattgcCATTGGCGAGAAGCTGCCCATTAAATCACACTCACAGATGTGTTGTGCAGCTGGAGTTGGGTGTCGCGGGGTCCGTCAGATGTAGCGTAACAGGGGGAGAATGCTGGGCTGACAGGAGGAAGCCAACAGATAGGATGCACAGACTCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 207925 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 387993 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 388027 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 476439 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 500948 13311873 ~ 13319748 (-) True G28377
TU42337 lncRNA upstream 39725 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 42370 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 52979 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 54253 13881305 ~ 13882012 (-) True G28569
TU42350 lncRNA upstream 55139 13882191 ~ 13882407 (-) True G28570
XM_043237565.1 mRNA downstream 35988 13763390 ~ 13784708 (-) False LOC122343235
XM_043237564.1 mRNA downstream 35988 13763390 ~ 13784708 (-) False LOC122343235
XM_043237563.1 mRNA downstream 35988 13763390 ~ 13784708 (-) True LOC122343235
XM_043237139.1 mRNA downstream 59840 13750834 ~ 13760856 (-) True LOC122342931
XM_043237140.1 mRNA downstream 59845 13750834 ~ 13760851 (-) False LOC122342931
XM_043237662.1 mRNA upstream 139 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA upstream 139 13827191 ~ 13831851 (-) False LOC122343280
XM_043236599.1 mRNA upstream 143212 13970264 ~ 13975630 (-) True LOC122342633
XM_043236601.1 mRNA upstream 148753 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA upstream 150304 13977356 ~ 13980608 (-) True alg10
XR_006250767.1 other downstream 121981 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 121981 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 398157 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 458758 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 458758 13316932 ~ 13361938 (-) False tmcc3
TU42363 other upstream 148305 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 342370 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 868808 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 981545 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 1197535 15024587 ~ 15027618 (-) True LOC122342864

Expression Profile