RNA id: TU42346



Basic Information


Item Value
RNA id TU42346
length 708
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G28569
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13881305 ~ 13882012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tTCCACAGCTAATAATTGAATGTCTTAAAAATTATGAAGCCAGAACCATTTGCCTCCTCCAACAGATACGAGTTAATTATGTTGCATTGTTCACAGATGAGGATTGCATTGAATCTGAACATAATCAGTTATGACACATGGGTAGCCACGTTGTGTTGAATTTATGAACGTCACTCGTTGAAAAACTCTAATTTCAGGGATCAGCGCGattattgatttatgttttCAGCTATTGATTACCAGTTTATACTAATTGGCAAACAACCGGCTTGAACGTCGATGCCAGTGATTCACCCGTGATTCCCACGATTCCTCAAACGCCTCGGGAACACGTACTGCATTAAAGGAATCCCGAAAAAAGCCcatttttagcattcattttaataaacagtggATGTTACCGTCTTTATATGAACAGCAGGATTGAATGGATTCGAATTAAGTGGCTCTTTTGTTGAAATACAAACGAGGCATTAAACATCGAAGTGAAAATGGAaaatttttatactgtaaagaAGATGCCACTGTTTGATTTAGAAAGTTATAAACTGATTAATATGCTTCTAATCATTTTGGGAAACCAGTTTGACACACAGCATTATTAGCATATGAGcaatttttacagaaaaacctGTGGTTATGCATTTATTGAAGAGCTGCTTctacataataataaagcagTCATATGTATTAGaattatacatttca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42341 lncRNA downstream 458 13880031 ~ 13880847 (-) True G28568
TU42309 lncRNA downstream 10691 13869422 ~ 13870614 (-) True G28544
TU42337 lncRNA downstream 14007 13866777 ~ 13867298 (-) True G28564
TU42310 lncRNA downstream 54253 13820696 ~ 13827052 (-) True G28545
TU42147 lncRNA downstream 268534 13610216 ~ 13612771 (-) True G28434
TU42350 lncRNA upstream 179 13882191 ~ 13882407 (-) True G28570
TU42368 lncRNA upstream 98778 13980790 ~ 13981164 (-) True G28577
TU42387 lncRNA upstream 110039 13992051 ~ 13992802 (-) True G28594
TU42390 lncRNA upstream 112006 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA upstream 168587 14050599 ~ 14074526 (-) False G28597
XM_043237662.1 mRNA downstream 49454 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA downstream 49454 13827191 ~ 13831851 (-) False LOC122343280
XM_043237565.1 mRNA downstream 96597 13763390 ~ 13784708 (-) False LOC122343235
XM_043236599.1 mRNA upstream 88252 13970264 ~ 13975630 (-) True LOC122342633
XM_043236601.1 mRNA upstream 93793 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA upstream 95344 13977356 ~ 13980608 (-) True alg10
XM_043236606.1 mRNA upstream 100344 13982356 ~ 13985446 (-) True srr
XM_043236607.1 mRNA upstream 100344 13982356 ~ 13985433 (-) False srr
XR_006250741.1 other downstream 49454 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 182590 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 182590 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 458766 13411624 ~ 13422539 (-) False G28397
XR_006250596.1 other downstream 519367 13324525 ~ 13361938 (-) False tmcc3
TU42363 other upstream 93345 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 287410 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 813848 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 926585 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 1142575 15024587 ~ 15027618 (-) True LOC122342864

Expression Profile