RNA id: TU42391



Basic Information


Item Value
RNA id TU42391
length 280
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G28597
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13994018 ~ 14074526 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCGGCTCGCAAATCGTAGCAAAGTTTCATGAACCCCGCTGATGGTCGGTGATAGATCCTTCAGTAACACCTGCTGGAAAACCCGCTGTAAATATACACCAGATCCCTGAGCGGGAGCGCGCTCTCTTCCCCTCCGCTGCCTATAAGAGCTGCGCGGTGTCCCCGGAGTCTTGATTGTGTGTGAGTTAATGTCAATCCCTCCAGAGAACACGGATCTGCGTGTCTTGTTGATGTCACcgaactcacacacacactcacacacacacacacacacacacgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42387 lncRNA downstream 57797 13992051 ~ 13992802 (-) True G28594
TU42368 lncRNA downstream 69435 13980790 ~ 13981164 (-) True G28577
TU42350 lncRNA downstream 168192 13882191 ~ 13882407 (-) True G28570
TU42346 lncRNA downstream 168587 13881305 ~ 13882012 (-) True G28569
TU42341 lncRNA downstream 169752 13880031 ~ 13880847 (-) True G28568
TU42554 lncRNA upstream 736914 14811440 ~ 14825838 (-) True LOC122342647
XR_006250623.1 lncRNA upstream 749247 14823773 ~ 14825837 (-) False LOC122342647
TU42586 lncRNA upstream 928623 15003149 ~ 15003429 (-) True G28738
XR_006250554.1 lncRNA upstream 943259 15017785 ~ 15023863 (-) True LOC122342397
TU42674 lncRNA upstream 1135158 15209684 ~ 15213451 (-) True G28789
XM_043236606.1 mRNA downstream 65153 13982356 ~ 13985446 (-) True srr
XM_043236607.1 mRNA downstream 65166 13982356 ~ 13985433 (-) False srr
XM_043236601.1 mRNA downstream 69984 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA downstream 69991 13977356 ~ 13980608 (-) True alg10
XM_043236599.1 mRNA downstream 74969 13970264 ~ 13975630 (-) True LOC122342633
XM_043236917.1 mRNA upstream 80966 14155492 ~ 14176742 (-) True cerk
XM_043237009.1 mRNA upstream 613347 14687873 ~ 14704622 (-) True LOC122342862
XM_043236609.1 mRNA upstream 630267 14704793 ~ 14725207 (-) True LOC122342640
XM_043236610.1 mRNA upstream 631754 14706280 ~ 14725207 (-) False LOC122342640
XM_043236612.1 mRNA upstream 734017 14808543 ~ 14810711 (-) True LOC122342642
TU42363 other downstream 70040 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 218748 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 351884 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 351884 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 628060 13411624 ~ 13422539 (-) False G28397
TU42429 other upstream 94896 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 621334 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 734071 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 950061 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 951584 15026110 ~ 15027618 (-) False LOC122342864

Expression Profile