RNA id: XM_043237114.1


Basic Information

Item Value
RNA id XM_043237114.1
length 3220
RNA type mRNA
GC content 0.47
exon number 13
gene id tbc1d22a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14177430 ~ 14294618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACCAATCACAGCTGCGCTAATGTGCGGTGGGCGGTACCAACATGGCGGCTCTCTGAGTTTGCGAAGAGAAATTGAGGTGTAAATAAACTCTTCGTGCACATTTTGCACAACTTATCAGCTTATTTCGCCACATTAATTTATGAGCGAGTGCTCTGAAGCCAAAAGATGTCAGGTGACGGCAACAAAAAACAGTTCTGGAAGAGAAACACAGCCAAGGTTCCTGGGAATATCCAGCATGTTTATGGGGCCCAACATCCCCCATTTGACCCTTTGCTACATGCCAATCTGATGAAAGCAGGAAACAAGCCTCCGACTGCAACTACGCCAGGAAAACCAAAGAAAGCCACCACTTTTCAAGAGTTCGAGAGCATCACCAGCGACGCCTGGGATGTGGGAGACGACGACGACGAACTTCTCGCCATGGCGGCCCAAAATCTCAACATCGAGGTCGTCATGGAGACGGCTAATAAGGTGATCGAAAACCACAGCAAGCTGCAGGAGAGAAGACAGCAGCAGATGGACAAGATGACCGAGCCTGACGAAAAAGACGGACAGGAAGCGcacgaggaagaggaggaagagccAGACGAAGAAGACGAGAGAGAGGAAGGGGCAGAGACGACAGCAGATCTGTCTTTCAGTTTAGAGGCTCTTCCGCTCAGCGACAATAGACTGGTGAAGTCACACAGTGAAGCTCCCGTCGGCTCACCTAAAGAAGCGGGAGTTGAGCAGGCAGTACTGCACAGACAGCAGTCACTCCCGCACAGGCCTGTGATTCCATTGGTGGCCCGCATGGCAGATCAGAACACATCCGGGACTCCTGCCTTGACCGAGAGGGAGGCGTCAAGACTCGACAAGTTCAAGCAGGTTCTGGCCGGACCTAATACTGATCTGGagGAGCTTCGGAAGTTGAGCTGGTCTGGAATTCCACGGCAGGTGCGCCCGATCACATGGAAACTGCTCTCGggGTACCTGCCAGCCAATGCGGAGCGGAGAGAAAGCACCTTGCAGAGGAAGCGGCAGGAATATTTTGGCTTTATCGAGCAGTATTATGACTCCCGTAATGATGAACACCATCAGGACACGTACAGACAGATTCATATAGATATTCCCCGGATGAGTCCGGAAAGTTTAGTTCTGCAGCCGAAGGTAACTGAGATCTTTGAGAGGATTCTGTTCATCTGGGCAATACGGCATCCAGCGAGTGGTTATGTTCAAGGCATCAATGACCTTGTCACACCCTTCTTCGTCGTTTATGTTTTCGAGTATATCGAGGAAGAAGTGGAAAATTTCAATGTTTCCAGCTTGCAGGAAGAGGTGTTGCGGAACATCGAGGCTGACAGCTTCTGGTGCATGAGCAAGCTCCTGGACGGGATTCAGGACAACTACACCTTCGCCCAGCCTGGGATCCAGAGGAAAGTGAAGGCACTGGAAGAGCTGGTCAGCCGGATTGATGagaCGGTGCACCGCCACATGCAGCAGTACGAGGTGGAGTACTTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTTATGAGAGAACTTCCTCTGCGCTGCACCATTAGACTCTGGGACACTTATCAGGCAGAGCCTGAAGGATTCTCTCATTTCCATCTGTACGTGtgtgctgccttcctggtgcgATGGAGGAAAGAGATACTAGAGGAGAAAGATTTCCAGGGTCTGATGATCCTGCTCCAGAAtctacccacaatgcactgggGAAATGAGGAAGTCAGCGTTCTCCTAGCTGAAGCTTACCGGCTGAAGTTTGCCTTTGCCGATGCTCCTAACCATTACAAAAGATGAGGCTTCGCCCAGCACAATCACTGAACATGACGAGCCCTGCTGACCTCGGAGATGCAACTGTCTGTGTAATGATACTGAACTGAaaccatgacatttttttttatggagatGGGAATATGATCCGCAGCTGTTCCTGGAATTTTTCCGCATTTCTACTAATATCAGCACTCCGAATGCCATGAGTCGCCCGGATGTCAAAATCGTGCTCttgaaatacattaatttaatcattgtTTCGTaggcttttcttcttttaatcACAACCTATAccgagatttttttttgtttgttttttcacgCACTGAGCCTTCGGGAAGTTCATTTAGATGACGAGATTCTAGGAAGTGACGGCGACGATAGGATGGATTCTGGCCTGATTGATTTGTGGCAATAATAAGacgtcatttaaaaaaaacgtggtTTATGAACATACGCAGTAAGGTCTTTTGGCTTAAACGGCGCCTACGAACGCTTATTCTAACCTTGGTCTACCTCAGGAAGCGGGCGGGATTCGTAGGGTGTTCGTTTCGTCTCTGCATGTGAACGGCGCCCATGAGGCTTTGCGGTGAAGTCGATAAAATTTGCCTTATTTTGGCTGTTTCAGTTTCGCGAGGCACGGGTTCAGTGAAACGAAGGCAGCTGGAGATGCAAGTACTGATGAAATTTTTGCTTTCCCTGTTGCTCGCGGCCCTGTCATTTTGACACCCCGTTTTGATATTGATATAATAATCCGTACCGACTGTACAACGCTGTCATTAATAGATGTGTTTGGGGGATCTCGGCTTCTGACTTTTGACATTTTGTCAGTATTTGAACTGTGCGCCGCTTCAATCATGCcatcaggctttttttttttaatttgcgtGCCAGTTCTTACAACTAAATATAAGTGTGAAACTGCACTTGATGAGTCTATTTTCCTCCTTTTTGTACAAGATATATTCTATGAATCcgcttttttaaattctttcttctttttttttatatactgtttaCATGAGCCTGTTAAGTTGTGCCTAACTCTAGAGATTGACGACAtcacagatatttattttacgTTCGTGATCATTTAGGACGCGGCAAAAGCGGAACGTTTGCCTCGACGACATTTGCTCCTGCGCAAGCAGTGAATTCAGCAGCTCCGCAGCTTTCCTCCGGCCGTTTGATGGGCCGTAGAATTGAAGGGATTTTACCGTAACTGACATTCAGTGCCTGGACAACGTGGGGTTACCGTACGAGCTACGTGGGTTGCTGGAAGGTTTTCCGGACGCCGAGCTTCTTGACTTCAAACTACGGAAACATCCGAatggaattttaaaagtgtgaGTGAATTAAATAGCTGTGTACAGAATTATGTTTTCAAAGAGATGTAAAtagaaaatgtgtaaataaatactatatatggTTA

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42249 lncRNA upstream 184600 13992063 ~ 13992831 (+) False G28503
TU42246 lncRNA upstream 184631 13992023 ~ 13992800 (+) True G28503
TU42247 lncRNA upstream 184631 13992063 ~ 13992800 (+) False G28503
TU42214 lncRNA upstream 348894 13828025 ~ 13828537 (+) True G28486
TU42167 lncRNA upstream 417319 13757967 ~ 13760112 (+) True G28446
TU42486 lncRNA downstream 513979 14808597 ~ 14809661 (+) False G28667
TU42487 lncRNA downstream 513979 14808597 ~ 14809661 (+) True G28667
TU42569 lncRNA downstream 540012 14834630 ~ 14854751 (+) True G28726
XR_006250624.1 lncRNA downstream 568415 14863033 ~ 14864100 (+) True LOC122342648
TU42594 lncRNA downstream 819493 15114111 ~ 15114528 (+) True G28745
XM_043237569.1 mRNA upstream 62123 14074263 ~ 14115308 (+) True gramd4a
XM_043236203.1 mRNA downstream 105506 14400124 ~ 14482461 (+) False tafa5a
XM_043236204.1 mRNA downstream 130363 14424981 ~ 14482461 (+) False tafa5a
XM_043236611.1 mRNA downstream 431281 14725899 ~ 14754357 (+) True LOC122342641
XM_043236613.1 mRNA downstream 463874 14758492 ~ 14761972 (+) True LOC122342644
XM_043237011.1 mRNA downstream 489858 14784476 ~ 14807366 (+) True LOC122342863
XR_006250622.1 other upstream 185659 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other upstream 185659 13985517 ~ 13991772 (+) False trmu
XR_006250631.1 other upstream 225006 13882909 ~ 13952425 (+) False LOC122342701
XR_006250632.1 other upstream 238205 13882894 ~ 13939226 (+) False LOC122342701
XR_006250630.1 other upstream 743825 13405929 ~ 13433606 (+) False vezt
TU42446 other downstream 105411 14400029 ~ 14482821 (+) True tafa5a
TU42445 other downstream 130313 14424931 ~ 14482821 (+) False tafa5a
TU42601 other downstream 912533 15207151 ~ 15214432 (+) True LOC122343376
TU42701 other downstream 1144716 15439334 ~ 15555682 (+) True G28806
TU42722 other downstream 1355677 15650295 ~ 15655181 (+) True cdkn1d

Expression Profile