RNA id: TU42554


Basic Information

Item Value
RNA id TU42554
length 1484
lncRNA type sense_over
GC content 0.34
exon number 3
gene id LOC122342647
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14811440 ~ 14825838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaataaataaaattattttaaaataaagtaaatcagAGCCTGAGAAAATATCTGCATTATTATCTGCGCAATTTCTgtgactgggaaaaaaaaaagcacttctcGTTGCTCCAAGAGAGGAAAATAATCACATTAATGGATTTAAGGATCATCATTagtatttgttttgatttgtgccgatttaaaaaaaaaaaaagactaaacaaAAACGAGTCCTTTTTGGACGGGATTTTAATTACTGTGATTAATGTGCGTGATCACTAAGAGTaatgagaaatataaaaatgctcaaaagcaaaacaaacggGTGCATTATGATAATGAGAATTGTGCTTGGTTTTCATAAAAATcgtctcaaaataataataataataacataaatggGCGGAAAAGATTGTTTAATACTAATACTTTTGTTATTGTCTTATACTTTCGGTATTGTTTGGTCAAGAAAAATAGgcctgttttgtttatttttttaaatcctataaaaataaaacagtatttttcttTCGATTTTTGGGTTAAAACGTGAGTCGTGTTACATGTTTGGCCGAGACTCCTTGTAATACCATCAAGAATTGATATTATTTTCCACTAGGAGGAGCCCCACTCTCTTGTTTGGAAGGGGTTCTGGATCCAATCAGCATCCGTCGGCTGCAGACGCACTCAAAGCGTTCCTGCCAGGCAACTCGACGGAGGTCTCGAAAAGCTTCTACACGTCAGATGCCTTCACCGTGAATATATCTGTACAATACAACTGAGAGTTGAACTTACTGAAGCAATCTAAACTTTCTCAGATACTTTGTCACCAAATGCTGCCGTGCTTGTCTCAGGACTACACTGAAAGCTGCTTTGATTGTGGACTGTCCATTTGAATCAACGCCACTGATGCATGGAAGTGTCTCTAATAGAAATAACTTCGTTTTTTTTCGATTGAGAAAGTTGGAGAATGTTTATGATGCTTGTAAAACCTCGCTGAGGACATCTATTTCAAATGCTTTGAAAGATCATGTTGCACTCACGTGAAACATGATTACTTCTGTCGATGAAGAAGATCCAATGGATGAAGGCTATGAAGGATGACggccttttatttttgattaaagacTTAATAGCTGTTGATTCAAACTGAAGGCAAATAAAACCAATGAAGTTTGTCGTGTCTGTTTTGCTTTCACGGTACCAAATGTTACAATGTTTTGAAGATGTTCCCTACATGTTTTGGACACTATTGaggattttatttcaatttgtttcaattttaaaaattccTTATCCGAAACCTCTTTATTTGCAGTTTCTCTGCTCGTATGTTTTATCCGTTTTGGAAGAAACCTTTCAGACTGTATATAGGCTTATTTGCTGTTTTCTCTTTGGTTTTCGacattttatatctatataaaaaatctaatgaaaAACCAAGACTGtacaaagtttgtttttaataaagtgtttttggtCATAaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42390 lncRNA downstream 736914 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA downstream 736914 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA downstream 741035 14068087 ~ 14070405 (-) True LOC122342415
TU42387 lncRNA downstream 818638 13992051 ~ 13992802 (-) True G28594
TU42368 lncRNA downstream 830276 13980790 ~ 13981164 (-) True G28577
TU42586 lncRNA upstream 177311 15003149 ~ 15003429 (-) True G28738
XR_006250554.1 lncRNA upstream 191947 15017785 ~ 15023863 (-) True LOC122342397
TU42674 lncRNA upstream 383846 15209684 ~ 15213451 (-) True G28789
TU42788 lncRNA upstream 591018 15416856 ~ 15418238 (-) True G28850
XR_006250641.1 lncRNA upstream 617926 15443764 ~ 15445229 (-) True LOC122342747
XM_043236612.1 mRNA downstream 729 14808543 ~ 14810711 (-) True LOC122342642
XM_043236609.1 mRNA downstream 86233 14704793 ~ 14725207 (-) True LOC122342640
XM_043236610.1 mRNA downstream 86233 14706280 ~ 14725207 (-) False LOC122342640
XM_043237009.1 mRNA downstream 106818 14687873 ~ 14704622 (-) True LOC122342862
XM_043236917.1 mRNA downstream 634698 14155492 ~ 14176742 (-) True cerk
XM_043236616.1 mRNA upstream 429 14826267 ~ 14847177 (-) True LOC122342646
XM_043237012.1 mRNA upstream 199546 15025384 ~ 15027663 (-) False LOC122342864
XM_043237810.1 mRNA upstream 298207 15124045 ~ 15136539 (-) False brd1a
XM_043237809.1 mRNA upstream 298207 15124045 ~ 15136539 (-) False brd1a
XM_043237808.1 mRNA upstream 298207 15124045 ~ 15136537 (-) False brd1a
TU42549 other downstream 1303 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 114254 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 634715 14169422 ~ 14176725 (-) False cerk
TU42363 other downstream 830881 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 979589 13815574 ~ 13831851 (-) True LOC122343280
TU42583 other upstream 198749 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 200272 15026110 ~ 15027618 (-) False LOC122342864
XR_006250613.1 other upstream 775602 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 1021131 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 1031546 15857384 ~ 15857502 (-) True LOC122343689

Expression Profile