RNA id: TU42711


Basic Information

Item Value
RNA id TU42711
length 596
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G28813
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15488076 ~ 15492182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cggctggggaaacgtgctggaagcctccgcactctggcacgagggcagagatagcggagttactccctgagggccctgaggaggaacgggtgccgtctgacccggtgttagggttatgtattgacattttgcaactttgatccttcagttacagcttccatcgggtgccaggctttgtcagcctgatgagaacggaatgttggagttaaatgttgacagttatgcacctgtggccttttagtttcagtttgattcttggtcataacatggcctccgtagaatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcctttcctctataaataaagtgacttgcgatctgagtcggaggaggcaaagcaggaggaggcaaagcaggaggaggcaaagcagggaaggaggcagaaggcaggggcctgcccggcccccggcctcaggcggactgagatccgtctggagacaaaagggaggttaaggagaaacctgcttctctcccgcttgcaatcgacagcaatctttgcaagccttaaaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42692 lncRNA upstream 67773 15413147 ~ 15420303 (+) False LOC122342869
TU42685 lncRNA upstream 113539 15374110 ~ 15374537 (+) True G28797
XR_006250764.1 lncRNA upstream 146572 15339618 ~ 15341504 (+) True LOC122343380
TU42594 lncRNA upstream 373548 15114111 ~ 15114528 (+) True G28745
XR_006250624.1 lncRNA upstream 623976 14863033 ~ 14864100 (+) True LOC122342648
TU42719 lncRNA downstream 73317 15565499 ~ 15655181 (+) False cdkn1d
TU42723 lncRNA downstream 73317 15565499 ~ 15655278 (+) False cdkn1d
TU42843 lncRNA downstream 233010 15725192 ~ 15725554 (+) True G28882
TU42850 lncRNA downstream 245286 15737468 ~ 15737762 (+) True G28888
TU42851 lncRNA downstream 262631 15754813 ~ 15755128 (+) True G28889
XM_043237013.1 mRNA upstream 73531 15413147 ~ 15414545 (+) True LOC122342869
XM_043237806.1 mRNA upstream 132521 15342262 ~ 15355555 (+) True LOC122343379
XM_043237803.1 mRNA upstream 275372 15157755 ~ 15212704 (+) False LOC122343376
XM_043237801.1 mRNA upstream 275372 15157755 ~ 15212704 (+) False LOC122343376
XM_043237804.1 mRNA upstream 275372 15157755 ~ 15212704 (+) False LOC122343376
XM_043236561.1 mRNA downstream 103479 15595661 ~ 15602006 (+) True nup50
XM_043236025.1 mRNA downstream 146330 15638512 ~ 15644874 (+) True LOC122342219
XM_043236428.1 mRNA downstream 158168 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA downstream 158314 15650496 ~ 15653260 (+) False cdkn1d
XM_043236533.1 mRNA downstream 882394 16374576 ~ 16377941 (+) True LOC122342595
TU42601 other upstream 273644 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1005255 14400029 ~ 14482821 (+) True tafa5a
TU42445 other upstream 1005255 14424931 ~ 14482821 (+) False tafa5a
TU42431 other upstream 1303816 14177464 ~ 14184260 (+) False tbc1d22a
XR_006250621.1 other upstream 1496304 13985517 ~ 13991772 (+) False trmu
TU42722 other downstream 158113 15650295 ~ 15655181 (+) True cdkn1d
TU42853 other downstream 349190 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 493037 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 981716 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2808233 18300415 ~ 18301189 (+) True G29526

Expression Profile