RNA id: TU42843


Basic Information

Item Value
RNA id TU42843
length 296
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G28882
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15725192 ~ 15725554 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttaaacatggtaaaacacagatcatgaatgtacatgttcaaatcaaaatgagtctttagttcatgttgttctgtgaaccagtcaaaattcaattagtttcagttcccctttaatcgtctctctctcctccgcatCCATCCACAGCAGGACTCCCACCAGGACTGCTACTGCCACAAAGGTGATCTCTTTCCACGCCATGCTAAAAATGAGTAGGGCTCTGTTGGTTTCTTCACCGGGTTGAGACCAGCGAGACCTATTGCCTTCACCACCCTTTGTAACCGGACTTCACACCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42723 lncRNA upstream 69914 15565499 ~ 15655278 (+) False cdkn1d
TU42719 lncRNA upstream 70011 15565499 ~ 15655181 (+) False cdkn1d
TU42711 lncRNA upstream 233010 15488076 ~ 15492182 (+) True G28813
TU42692 lncRNA upstream 304889 15413147 ~ 15420303 (+) False LOC122342869
TU42685 lncRNA upstream 350655 15374110 ~ 15374537 (+) True G28797
TU42850 lncRNA downstream 11914 15737468 ~ 15737762 (+) True G28888
TU42851 lncRNA downstream 29259 15754813 ~ 15755128 (+) True G28889
TU42852 lncRNA downstream 114648 15840202 ~ 15840666 (+) True G28890
TU42858 lncRNA downstream 202577 15928131 ~ 15928838 (+) True G28896
TU42863 lncRNA downstream 331921 16057475 ~ 16057700 (+) True G28901
XM_043236428.1 mRNA upstream 71932 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA upstream 71932 15650496 ~ 15653260 (+) False cdkn1d
XM_043236025.1 mRNA upstream 80318 15638512 ~ 15644874 (+) True LOC122342219
XM_043236561.1 mRNA upstream 123186 15595661 ~ 15602006 (+) True nup50
XM_043237013.1 mRNA upstream 310647 15413147 ~ 15414545 (+) True LOC122342869
XM_043236533.1 mRNA downstream 649022 16374576 ~ 16377941 (+) True LOC122342595
XM_043236536.1 mRNA downstream 653079 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA downstream 653080 16378634 ~ 16398499 (+) False LOC122342597
XM_043236535.1 mRNA downstream 653081 16378635 ~ 16398499 (+) False LOC122342597
XM_043236538.1 mRNA downstream 653081 16378635 ~ 16398499 (+) False LOC122342597
TU42722 other upstream 70011 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 169510 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 510760 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1242371 14400029 ~ 14482821 (+) True tafa5a
TU42445 other upstream 1242371 14424931 ~ 14482821 (+) False tafa5a
TU42853 other downstream 115818 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 259665 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 748344 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2574861 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2710906 18436460 ~ 18461317 (+) True G29545

Expression Profile