RNA id: TU42850


Basic Information

Item Value
RNA id TU42850
length 295
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G28888
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15737468 ~ 15737762 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGTTTAAGGGGTCTTTCttatgctctttttctttctgcactgcaaccaatctttcttgtttctctctttttttctcttcgactttcacctgtcttttatcagcctgctcttgccacttcgtcgcttcaatcaattgaagtttcaacagatcaaccttttttcccttggctaaggataaatcaacctttattttgtttattaagagagcgcagtcccttttgactaatttaccactgaaatcatatcttttattccactcattgagatatcgcacactgtctgccgaatatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42843 lncRNA upstream 11914 15725192 ~ 15725554 (+) True G28882
TU42723 lncRNA upstream 82190 15565499 ~ 15655278 (+) False cdkn1d
TU42719 lncRNA upstream 82287 15565499 ~ 15655181 (+) False cdkn1d
TU42711 lncRNA upstream 245286 15488076 ~ 15492182 (+) True G28813
TU42692 lncRNA upstream 317165 15413147 ~ 15420303 (+) False LOC122342869
TU42851 lncRNA downstream 17051 15754813 ~ 15755128 (+) True G28889
TU42852 lncRNA downstream 102440 15840202 ~ 15840666 (+) True G28890
TU42858 lncRNA downstream 190369 15928131 ~ 15928838 (+) True G28896
TU42863 lncRNA downstream 319713 16057475 ~ 16057700 (+) True G28901
TU42882 lncRNA downstream 674255 16412017 ~ 16419965 (+) True G28911
XM_043236428.1 mRNA upstream 84208 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA upstream 84208 15650496 ~ 15653260 (+) False cdkn1d
XM_043236025.1 mRNA upstream 92594 15638512 ~ 15644874 (+) True LOC122342219
XM_043236561.1 mRNA upstream 135462 15595661 ~ 15602006 (+) True nup50
XM_043237013.1 mRNA upstream 322923 15413147 ~ 15414545 (+) True LOC122342869
XM_043236533.1 mRNA downstream 636814 16374576 ~ 16377941 (+) True LOC122342595
XM_043236536.1 mRNA downstream 640871 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA downstream 640872 16378634 ~ 16398499 (+) False LOC122342597
XM_043236535.1 mRNA downstream 640873 16378635 ~ 16398499 (+) False LOC122342597
XM_043236538.1 mRNA downstream 640873 16378635 ~ 16398499 (+) False LOC122342597
TU42722 other upstream 82287 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 181786 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 523036 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1254647 14400029 ~ 14482821 (+) True tafa5a
TU42853 other downstream 103610 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 247457 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 736136 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2562653 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2698698 18436460 ~ 18461317 (+) True G29545

Expression Profile