RNA id: TU42851


Basic Information

Item Value
RNA id TU42851
length 316
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G28889
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15754813 ~ 15755128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGAGGCGAAACGCTATGAGGAAGCGTTCGTGAGGTTTCTTCCCCGCCGTGCTCAAGAGTCGGGACCGTCGGCCACCCGGTCCCGACCAGGTCCGGTTCCTTTGAGGCGTGAGGCACAGAGGGACAGTGTGGCGAGCCGAGCACCCCCTCGTAGAGACTGGGGTGCGGCTCGCCGCGCTTCACAGTCCGCCTCAAGGAGACCGGACCTGCGGAGCATAATCTCCGCAAAGAAGAAGTCCTGATGCTGGTGCACTCAGCACCGTGGGGGTGCCTCCCCCCGGGGAGGGGCGCGAAAAATTCCAACAGAGAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42850 lncRNA upstream 17051 15737468 ~ 15737762 (+) True G28888
TU42843 lncRNA upstream 29259 15725192 ~ 15725554 (+) True G28882
TU42723 lncRNA upstream 99535 15565499 ~ 15655278 (+) False cdkn1d
TU42719 lncRNA upstream 99632 15565499 ~ 15655181 (+) False cdkn1d
TU42711 lncRNA upstream 262631 15488076 ~ 15492182 (+) True G28813
TU42852 lncRNA downstream 85074 15840202 ~ 15840666 (+) True G28890
TU42858 lncRNA downstream 173003 15928131 ~ 15928838 (+) True G28896
TU42863 lncRNA downstream 302347 16057475 ~ 16057700 (+) True G28901
TU42882 lncRNA downstream 656889 16412017 ~ 16419965 (+) True G28911
TU42885 lncRNA downstream 656889 16412017 ~ 16419965 (+) False G28911
XM_043236428.1 mRNA upstream 101553 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA upstream 101553 15650496 ~ 15653260 (+) False cdkn1d
XM_043236025.1 mRNA upstream 109939 15638512 ~ 15644874 (+) True LOC122342219
XM_043236561.1 mRNA upstream 152807 15595661 ~ 15602006 (+) True nup50
XM_043237013.1 mRNA upstream 340268 15413147 ~ 15414545 (+) True LOC122342869
XM_043236533.1 mRNA downstream 619448 16374576 ~ 16377941 (+) True LOC122342595
XM_043236536.1 mRNA downstream 623505 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA downstream 623506 16378634 ~ 16398499 (+) False LOC122342597
XM_043236535.1 mRNA downstream 623507 16378635 ~ 16398499 (+) False LOC122342597
XM_043236538.1 mRNA downstream 623507 16378635 ~ 16398499 (+) False LOC122342597
TU42722 other upstream 99632 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 199131 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 540381 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1271992 14400029 ~ 14482821 (+) True tafa5a
TU42853 other downstream 86244 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 230091 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 718770 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2545287 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2681332 18436460 ~ 18461317 (+) True G29545

Expression Profile