RNA id: TU42852


Basic Information

Item Value
RNA id TU42852
length 414
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G28890
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15840202 ~ 15840666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgTTGGAGTTATGTATgtatccatcgggtgccaggctttgtcagcctggtgagaacggaatgttggagttaaatgttgacagttatgcacctgtggctcttttagtttcagtttgattcttggtcataacatggcctccgtataatactgatagggccaccggaagaatccgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttattgtatcttgtcttttcctctataaataaagtgacttgcgatctgagtttcggaggaggcaatggaggcaaaagggaggttaaggagaaacctgcttctctcccgcttgcaaccgacagcgcaatccttgcaagcttaaaaatccaaaaacttgtcttgtgttttatttcgccttgagttgatccttcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42851 lncRNA upstream 85074 15754813 ~ 15755128 (+) True G28889
TU42850 lncRNA upstream 102440 15737468 ~ 15737762 (+) True G28888
TU42843 lncRNA upstream 114648 15725192 ~ 15725554 (+) True G28882
TU42723 lncRNA upstream 184924 15565499 ~ 15655278 (+) False cdkn1d
TU42719 lncRNA upstream 185021 15565499 ~ 15655181 (+) False cdkn1d
TU42858 lncRNA downstream 87465 15928131 ~ 15928838 (+) True G28896
TU42863 lncRNA downstream 216809 16057475 ~ 16057700 (+) True G28901
TU42882 lncRNA downstream 571351 16412017 ~ 16419965 (+) True G28911
TU42885 lncRNA downstream 571351 16412017 ~ 16419965 (+) False G28911
TU42887 lncRNA downstream 571860 16412526 ~ 16420148 (+) True G28912
XM_043236428.1 mRNA upstream 186942 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA upstream 186942 15650496 ~ 15653260 (+) False cdkn1d
XM_043236025.1 mRNA upstream 195328 15638512 ~ 15644874 (+) True LOC122342219
XM_043236561.1 mRNA upstream 238196 15595661 ~ 15602006 (+) True nup50
XM_043237013.1 mRNA upstream 425657 15413147 ~ 15414545 (+) True LOC122342869
XM_043236533.1 mRNA downstream 533910 16374576 ~ 16377941 (+) True LOC122342595
XM_043236536.1 mRNA downstream 537967 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA downstream 537968 16378634 ~ 16398499 (+) False LOC122342597
XM_043236535.1 mRNA downstream 537969 16378635 ~ 16398499 (+) False LOC122342597
XM_043236538.1 mRNA downstream 537969 16378635 ~ 16398499 (+) False LOC122342597
TU42722 other upstream 185021 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 284520 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 625770 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1357381 14400029 ~ 14482821 (+) True tafa5a
TU42853 other downstream 706 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 144553 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 633232 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2459749 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2595794 18436460 ~ 18461317 (+) True G29545

Expression Profile