RNA id: TU42891


Basic Information

Item Value
RNA id TU42891
length 339
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G28916
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16378700 ~ 16383670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGGTGAAGTGATGTGTAAAGCTTTAGAACTCAAGTCAACAGGAAGCGCAGAACAAACTTTTCTCCTCATAAAACCACGTCTGGTTCCTGATTTGTCTTCACCTAATGTCCCGAAGGGATTGTGCGTCCGTCATGTATCCCGCTCCTCCTTCAAGAAAATGCACGGATACGATTAACAGTGATACATTAACGCTTGCACGGTCACACAGCTCGCGCTTCTCCTCTCACGACGCATGTTTTTTCTCGTAACGGACTAGTCTTCGGCTAACGACAGTAACCATGGCCAGACAAAGACACAACAGAGCCACCGGCTGCCACCATCCCACTTCATGATTGT

Function

GO:

id name namespace
GO:0030354 melanin-concentrating hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42859 lncRNA downstream 449800 15928143 ~ 15928900 (-) True G28897
TU42857 lncRNA downstream 534961 15843405 ~ 15843739 (-) True G28895
TU42849 lncRNA downstream 644817 15733363 ~ 15733883 (-) True G28887
TU42824 lncRNA downstream 723519 15565419 ~ 15655181 (-) True G28870
XR_006250641.1 lncRNA downstream 933471 15443764 ~ 15445229 (-) True LOC122342747
TU42910 lncRNA upstream 28190 16411860 ~ 16419956 (-) True G28933
TU42913 lncRNA upstream 28190 16411860 ~ 16419956 (-) False G28933
TU42916 lncRNA upstream 28857 16412527 ~ 16420139 (-) True G28935
TU42950 lncRNA upstream 77092 16460762 ~ 16461511 (-) True G28966
TU42954 lncRNA upstream 80775 16464445 ~ 16464679 (-) True G28970
XM_043236016.1 mRNA downstream 698582 15674819 ~ 15680118 (-) False tmem19
XM_043236018.1 mRNA downstream 698676 15674819 ~ 15680024 (-) False tmem19
XM_043236017.1 mRNA downstream 698676 15674819 ~ 15680024 (-) True tmem19
XM_043236424.1 mRNA downstream 705466 15664443 ~ 15673234 (-) True zgc:171422
XM_043236426.1 mRNA downstream 714394 15656075 ~ 15664306 (-) False slc37a3
XM_043236543.1 mRNA upstream 94121 16477791 ~ 16483176 (-) True LOC122342598
XM_043237033.1 mRNA upstream 100897 16484567 ~ 16498839 (-) True LOC122342885
XM_043236534.1 mRNA upstream 154310 16537980 ~ 16542902 (-) True LOC122342596
XM_043236544.1 mRNA upstream 189457 16573127 ~ 16593094 (-) True LOC122342599
XM_043237521.1 mRNA upstream 326854 16710524 ~ 16724794 (-) False LOC122343211
XR_006250870.1 other downstream 358138 16020444 ~ 16020562 (-) True LOC122343883
XR_006250906.1 other downstream 358541 16020041 ~ 16020159 (-) True LOC122343926
XR_006250859.1 other downstream 360525 16018057 ~ 16018175 (-) True LOC122343872
XR_006250836.1 other downstream 360924 16017658 ~ 16017776 (-) True LOC122343847
XR_006250848.1 other downstream 367166 16011416 ~ 16011534 (-) True LOC122343860
TU43020 other upstream 324104 16707774 ~ 16708960 (-) True G29022
XR_006250655.1 other upstream 503304 16886974 ~ 16900295 (-) True prkchb
TU43174 other upstream 623257 17006927 ~ 17017823 (-) True G29135
TU43209 other upstream 734958 17118628 ~ 17122129 (-) True xrcc3
TU43541 other upstream 1253489 17637159 ~ 17638709 (-) False srd5a3

Expression Profile