RNA id: TU42916


Basic Information

Item Value
RNA id TU42916
length 259
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G28935
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16412527 ~ 16420139 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTAACTTGTTTGGTTTTCATTGATTGGATGTCCTGTAATTTAAACCCGCCCCAAAGTAGGTGAGAGGAATCCGATTGGTTAATAGAGAAagagaaggaaaaaaggaGAGTCGTGAGTCGAACGAACTTGCGAGAGATTAGGGGAAAAATTGGGCTTTTCGTTCAATTGTCGTTacccgtgtgttttttttccttttgtattgATTATTAACATACAGTTAATATTAACGTCGAGTTTATCAGCGTTTTCTCAAGAAC

Function

GO:

id name namespace
GO:0016900 oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor molecular_function
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42891 lncRNA downstream 28857 16378700 ~ 16383670 (-) True G28916
TU42859 lncRNA downstream 483627 15928143 ~ 15928900 (-) True G28897
TU42857 lncRNA downstream 568788 15843405 ~ 15843739 (-) True G28895
TU42849 lncRNA downstream 678644 15733363 ~ 15733883 (-) True G28887
TU42824 lncRNA downstream 757346 15565419 ~ 15655181 (-) True G28870
TU42950 lncRNA upstream 40623 16460762 ~ 16461511 (-) True G28966
TU42954 lncRNA upstream 44306 16464445 ~ 16464679 (-) True G28970
XR_006250611.1 lncRNA upstream 124815 16544954 ~ 16545621 (-) True LOC122342601
XR_006250612.1 lncRNA upstream 130194 16550333 ~ 16551004 (-) True LOC122342602
TU43009 lncRNA upstream 189497 16609636 ~ 16609999 (-) True G29012
XM_043236016.1 mRNA downstream 732409 15674819 ~ 15680118 (-) False tmem19
XM_043236018.1 mRNA downstream 732503 15674819 ~ 15680024 (-) False tmem19
XM_043236017.1 mRNA downstream 732503 15674819 ~ 15680024 (-) True tmem19
XM_043236424.1 mRNA downstream 739293 15664443 ~ 15673234 (-) True zgc:171422
XM_043236426.1 mRNA downstream 748221 15656075 ~ 15664306 (-) False slc37a3
XM_043236543.1 mRNA upstream 57652 16477791 ~ 16483176 (-) True LOC122342598
XM_043237033.1 mRNA upstream 64428 16484567 ~ 16498839 (-) True LOC122342885
XM_043236534.1 mRNA upstream 117841 16537980 ~ 16542902 (-) True LOC122342596
XM_043236544.1 mRNA upstream 152988 16573127 ~ 16593094 (-) True LOC122342599
XM_043237521.1 mRNA upstream 290385 16710524 ~ 16724794 (-) False LOC122343211
XR_006250870.1 other downstream 391965 16020444 ~ 16020562 (-) True LOC122343883
XR_006250906.1 other downstream 392368 16020041 ~ 16020159 (-) True LOC122343926
XR_006250859.1 other downstream 394352 16018057 ~ 16018175 (-) True LOC122343872
XR_006250836.1 other downstream 394751 16017658 ~ 16017776 (-) True LOC122343847
XR_006250848.1 other downstream 400993 16011416 ~ 16011534 (-) True LOC122343860
TU43020 other upstream 287635 16707774 ~ 16708960 (-) True G29022
XR_006250655.1 other upstream 466835 16886974 ~ 16900295 (-) True prkchb
TU43174 other upstream 586788 17006927 ~ 17017823 (-) True G29135
TU43209 other upstream 698489 17118628 ~ 17122129 (-) True xrcc3
TU43541 other upstream 1217020 17637159 ~ 17638709 (-) False srd5a3

Expression Profile