RNA id: XR_006250608.1


Basic Information

Item Value
RNA id XR_006250608.1
length 3326
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122342600
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16457477 ~ 16461526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGAGCTGAGAGTTATCAGCTGTTTCAGGAAGTCCCTGTTTGGCCTGATATATCTCCTGTCTATAATGTGGTCAATGGCATCCTCCAACAATATTTCATGGTGGATCATCAGctCTTACTTTCAGTGTTTCTCAAGGTCTTGTGGATGAATTCTGAAGCTGGCAATAAGTCCTTGCTGATGTCAAACCTGTGTTCTTCTCTTACAAGCACGCTGTAGTAAGTGATGTccatttctttgtaatattCTGCTCTTGTGTGAATGGTACCTTGCAGGTATTCCTTATATGCCACGGTGTTCAGGATGTGTGTGATACCCATCTCCTTCAGTTTGGCTCGGTCCATTGCCATCTCTCTGCGCAAAAACACAACAGCTTAGATTAGTCCTTCATTTAAGTGGATTTACGAAGTGGAAGAAATATAACTGCATGCAGTGTTTAATTCCTGTTCATACGGTATCAGACTTACTCATTTCCAATGAAGACATTGGGCCAGACTTCAGTGACAGGTGTCCAGAGCACTTTACATTTGCACATCTGATGCTCCAGTTGGAAAATGTGCACAAGGAAATGTTTGTGACTCGAGCTTCCTGTTGCCACTTGAGCTTCCTGAGTTTTTGGAGCTGAGGCACAGAACCGTTCTGCATCGACCAGATCCACTTCAGGTTCTGGTTCAGGATCTGGGACACGCGGTGGTTCTGGATCAGGCTCTGCTGAGATCTCGACGGGCTCTACTCCGTTCTTCTTGAAGGGTTTTTTCACAGCGTTCCATCCTCTTTGGAAGAACGCAAGAAGAGCGGGAAATCGCTGGCCATTGAATAATCAAGTTCGAGAAGATGGATAATTATTCGTTTGAATATTCATACGGTAAGTCAATGTTTATAATCTCTTGTACAGGGATTGGCCTAAATTAGTGCTTTGATTTTGGGATCTTTTGCTAATGTGAAATCCCGAGGGGGAAAAATCTGTTTTCACTTATTCATCCAGTAATAACGTGATACGAACACATTTACCATGCCATTTTTGTAAAACCATTTAACCAAACTACCTAGATCTTTTCATgccataatatttataaattcatcTAGGCGTTCGATTCTGCTTAAAACATTGGTTTACgcttaattaataaataaataaataacgcaaagcgattcacaaaaaaatctctttcaaTGGCAATTATAAAAGGTAATGTTACGCAGACACCGACatgcttttgatttttttttgtttttttgtttcagaataAATAATCTGATGAAGCAAGATCCAGTCTTAACGAATTGGGGATCAGGGATGCTGGTGGCATCGGACTTCTAAAATATGTTATAATCTGCAACATACagaataatcaaaaatgttcaCTTGAGTGATATTGTGGTTTTGAAGTCCTGCTGTAACTAACTCTCTGCTGTAGCTCTATCTCCATTTCACCAGGGAGACTATTCCATTAATCAGGAAAttgtttgttataaatgtaaatatatttgacgtttgtatataatatagttCTTTTAACAGTTGTGCAGATCTATGTATGAACCACTAAATAACACCACTAGGGAGCCCACAGTTCctcttttaattaatgaattattattatgtttttttttttttttcatattttcaggtCAAACTCTAAGCAGCCAGCGGTGGATGTTGAGCACAGAAGGTCAGGTCGTGTGTGAAGGAGCACAGCCCAACTTTGTCTCTGGTCTTGCAGGACTGTTTGCCTCATTCTACAATTTCAACCTCCAGTATCAAGAAGAGGCAGCTTGCAGCCTTGAGTTTGTTCAGAGGTTAGACtttatcatattttacattcatatacactatattgcccaAAGGATAGGGTCACCCCCTTGGATGAACAGATCTGACTACTTTAGTAAGTTCCATGAGTGGAAAccttaatatttatgaaatatgaacttATAGAGAAGTGATTGAACGGTACaatcatactcttaaaaataaaatgtggcgATTTTTAACAGCAGTTAATTCAAAGCGATATTGAGACATCTTACAAGATCTTCTAGACGGGTAACGCAAGCGATCACAAGAGCATTAAAATGAGACCGTTGGATGTTCATAAAGAAAACGAGTCAGAAGGTCAGTTTCATAAATTACGTATGATTAAAGGTACGTGCGTCTTTAAGTACAAAATTGTATCTAAAGttagaaatgtgttttctaATGGTTACGAGCAAAATTACACAGAAGAGTTTTTCACTAAAGCCAATCGTATACCCCACACTCCGCCTGTGTACAGTTTACGGGACTCTGACGGAGACCTTATTGCAGGGGGTTTTTATGAaaaagaattacaaaaatatattgtgaatCAGGATAAAACTTTAGAAAAGATTTTAGACCGAAAAAATACCCTTAAATTCGCTCCATGGCTTCCCGAAAGCGAAAAGGGGACATACAGAGCCCCCGTTAAAGTAAGATCGTGGAGAACATAATTATCTTTTGCAAGATCCTAACGCGAGACTACTACCGAAACCAGGCCGGTAATGGGTTACCGGGGAACACGGGAAACAAATATGTATGGCGCGGGGATAGGAGGAATTCTCAGAAGAGGTTTTAATATAGCAAACAGCCACAAGAAATAGTGACCACAGCGCTATCGAGATCGtacactgatgataataataataataataataataataatgtctcaGGACAGAACAGTAATGGCCTATTGGCTATGTCACAAGGTTCTTTTAAACCGCCAGGGTACGACTTCGTAGGACGCGAGAAAAAGACTAAACGTGCCTGAATGAAACGTACAGTTGCAAAACGCAGCTGACGTGTCCGTACGAAACTTGTAAAGAAAATGACCCGAAGACCTCTGAGCACTATCTTCCAAACCATGTCGCTATTTCACAACATGTCTGAGGAGACAATAAAATCAGAGCTAGACTTgtttacaatttgaaaaaatacaaaaaatacgtACATCGTAATACCGCCTCTATCAGCGATAATGGACTCTTCGCCGATATAATTTTTTAGAAGATTACGCCGATCTAAATAATactgtgggatttatgttttaaaggatttatgttttacaggttttactcaatagaagcactgtgcccaggcctcataaagagtttttctacttgatattatgtgtatgtgctgtgccAAATGTCTTATCTGCAGAAACAGGATGTGGAGATtgctgagcccatctactggtcaagaagaaacaaactgcacctggttctgtgaaggacaccctgagtgggaggaagacgcaagcacaagaatataaatactgtgtgaaatgtagtgtgagcatacagga

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42887 lncRNA upstream 37331 16412526 ~ 16420148 (+) True G28912
TU42882 lncRNA upstream 37514 16412017 ~ 16419965 (+) True G28911
TU42885 lncRNA upstream 37514 16412017 ~ 16419965 (+) False G28911
TU42863 lncRNA upstream 399779 16057475 ~ 16057700 (+) True G28901
TU42858 lncRNA upstream 528641 15928131 ~ 15928838 (+) True G28896
TU42953 lncRNA downstream 2919 16464445 ~ 16464690 (+) True G28969
TU42969 lncRNA downstream 13217 16474743 ~ 16475333 (+) True G28985
TU42977 lncRNA downstream 57885 16519411 ~ 16540160 (+) True G28991
TU43008 lncRNA downstream 148198 16609724 ~ 16610004 (+) True G29011
XR_006250728.1 lncRNA downstream 236995 16698521 ~ 16700218 (+) True LOC122343214
XM_043236529.1 mRNA upstream 182 16436391 ~ 16457297 (+) True ptprb
XM_043236532.1 mRNA upstream 30293 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA upstream 30293 16400881 ~ 16427186 (+) False LOC122342594
XM_043236542.1 mRNA upstream 58980 16378638 ~ 16398499 (+) False LOC122342597
XM_043236038.1 mRNA downstream 153819 16615345 ~ 16617218 (+) True LOC122342226
XM_043237522.1 mRNA downstream 239517 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA downstream 239517 16701043 ~ 16710156 (+) False chrna2b
XM_043237784.1 mRNA downstream 360587 16822113 ~ 16838424 (+) True rhoj
XM_043237031.1 mRNA downstream 463491 16925017 ~ 16932206 (+) True six4b
TU42861 other upstream 471753 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 615624 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 802298 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 901797 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 1243047 15207151 ~ 15214432 (+) True LOC122343376
TU42966 other downstream 12372 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 1838889 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1974934 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2421653 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2828694 19290220 ~ 19342911 (+) True G29814

Expression Profile