RNA id: TU42966


Basic Information

Item Value
RNA id TU42966
length 484
RNA type TUCP
GC content 0.48
exon number 1
gene id G28982
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16473898 ~ 16474381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGACTTTCTGCTTACTGCAACGGCCAGTGGACAAATGAAAGACTGGGTGAGTGAACATAGAGATACACTTGAAGTAGTTTATACTAGAGTAAGGGCTAGGCTAGGTAGGGCTGCACAGCTCCGTAAGGAGCGCCATGAACGGGTAGGAAAGGAACTTGCCTTGCAAGAAGGGCAAGAAGTGTATTTGCGTGATTATGGCATTCGTGGCCgtcataaaatacaaaatcattgGTCCAGCACTGTTTACAAAGTAGTTAGAACTCCAAGAGGTGATGGTGGCGTATACATTATAGAGCAGGCTGACAATCCTTCTTGTGTAAAACGGGTGCATGGGTCCCATTTAAAGATGGTACCATACAGCGAATTCTCTGGCCAGATGGTTGATCCAGGGTTAGGGGTACTGGATGATGACATGAACGAGCAGCTAGCTTCCCCAAGGGCCATGGATGTGGATGACCTGGAGATAGCCCTGGTGGGGGATTC

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42953 lncRNA upstream 9208 16464445 ~ 16464690 (+) True G28969
XR_006250610.1 lncRNA upstream 12372 16457477 ~ 16461526 (+) False LOC122342600
XR_006250608.1 lncRNA upstream 12372 16457479 ~ 16461526 (+) True LOC122342600
XR_006250609.1 lncRNA upstream 12372 16457699 ~ 16461526 (+) False LOC122342600
XR_006250607.1 lncRNA upstream 12372 16457699 ~ 16461526 (+) False LOC122342600
TU42969 lncRNA downstream 362 16474743 ~ 16475333 (+) True G28985
TU42977 lncRNA downstream 45030 16519411 ~ 16540160 (+) True G28991
TU43008 lncRNA downstream 135343 16609724 ~ 16610004 (+) True G29011
XR_006250728.1 lncRNA downstream 224140 16698521 ~ 16700218 (+) True LOC122343214
TU43024 lncRNA downstream 274337 16748718 ~ 16752589 (+) True G29026
XM_043236529.1 mRNA upstream 16601 16436391 ~ 16457297 (+) True ptprb
XM_043236532.1 mRNA upstream 46712 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA upstream 46712 16400881 ~ 16427186 (+) False LOC122342594
XM_043236536.1 mRNA upstream 75399 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA upstream 75399 16378634 ~ 16398499 (+) False LOC122342597
XM_043236038.1 mRNA downstream 140964 16615345 ~ 16617218 (+) True LOC122342226
XM_043237522.1 mRNA downstream 226662 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA downstream 226662 16701043 ~ 16710156 (+) False chrna2b
XM_043237784.1 mRNA downstream 347732 16822113 ~ 16838424 (+) True rhoj
XM_043237031.1 mRNA downstream 450636 16925017 ~ 16932206 (+) True six4b
TU42861 other upstream 488172 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 632043 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 818717 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 918216 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 1259466 15207151 ~ 15214432 (+) True LOC122343376
TU43729 other downstream 1826034 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1962079 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2408798 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2815839 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 3256881 19731262 ~ 19786128 (+) False G29835

Expression Profile