RNA id: TU42977



Basic Information


Item Value
RNA id TU42977
length 2339
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G28991
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16519411 ~ 16540160 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCCATCCTTTTATTGATGGATTATGTTTTCACTGGTGGCTACATGTAATTGTTTTCTGATTCGTGTGATCCAAacacttccttttttttgttttttttttacagaaattgagttttttaatttgtaaatgaaattaCAGAATACAAATGGCAAAGAAGTGAAGAAAAAGAATAGGAAAGATTCATTGTTTTACATTCATGTTACATTACATAACAGTTATGTAATAactgaattaaagaaaaaacaatccctttcatttgttttagaaGGGCAGAGAATCTATGATGAAAAACGAGGTCTGACAATGTGCCAATagtttttggaaataaaattcACAAAGCCACGAAGAATTCTGTAGCAATTACTTCACAAACTCagttcttgttaaaaaaaaatacacattttaataattaaaggaTGACTcactatatattaaaactatgaAGAAAGTTAGATGCACTTTAAATaagaacataaaacaaaacaagcaccATGACGCGACACTAATGACCttacatttctacaaatataaCAGTCTCTAAATGCATGACACACTTTTTCGGACGGAAGATCTTGACGGAAGTACACTAACGTCATAAAGGTTTCTAACACCATGTCCCAACTACACGCGATGAGTTCAAGTGCGACGCAATCAATCAaatatcacagccaatcagaagcgtgTGTGGGCGGGCTCTCACTACAAAATggatgcatttataatgtaaagtaCATACTGAGTGACTGATAACATTTCTGTTATGGAATAGACTCGTTGATTCGCAGCAAGTTTACTTGTCATTTTTAAGATGAAGGCATTCCTCCGAAAAAGGGGCGTGAAGCAATCattggacatttaaaaaaaaaaagtactgtgaaAGTAAAGTTTTCTCTTAATGGAAACCCTCTTATTAAGGGTATATGATtaataactgtttaatatattactatattgtCTATCAATATGCAAGATTTTCAAGAACCCAATTGGCTTATTTGATCTTAAGACCCTGATTGTTGTAGTGTTGGATATCAGTCATGTGATCATCATGACTCAATCACAGCTGTACTGACGTTTAGATTGACAGCACTCTCACCGAAATGGATTCAATATAGGAAATATTATGAAAGCAAGAACTTCCAGATCTACAAAAGTAACTTTTACTGACTATTGATCGGTAAGATCCTCAGAAAGGAAGAACAACTGATGAATGGGAAGAGTGTGTGAGCGAAGGtggttgtgaatgtgtgtagatgtgtgttaGTTACAGGATCAGAGAATGACAACGTTCCTCCGTCACAGTCCAGATACACTCTCACACGATCAAGCTGTCGATTAACGGGAAAACCAGAGCTGAAAGTCCGTCCGTGCTGCGCAAACCAGACACTGGTGTCGTAGAAATCGCGTCCCTTCCTCTGGTTGAATTCTGTAGTTACTCCCAGTCTCCAGACCGGGCTCTCTTTAACCTCCACATCCCAGCAGTGTGTTCCTGAGTCAAAACCCTCAGATCCCAGAACACAGAAATGATAGTCAAATCTTTCTGGGTTATCGGGGAGAGACTGACTGTTCTTGCTGTATCTCACGCTGGTCAGATCGCCAGACAGAATGAGATCTGGATGAGCCGTGTTCGGATCCAGAATCACAGGAGCTGATAAGACACAACcaacagatgcttttattctgATGTTCATGTAATGGTCAAGAGTGAACTTCTGTAGTTCAAGCACATTAGACTTTTTCTATGATCACTGTCATTGATCACTGTCACTGTCAATTTCTGACGTTCTGAAAATGTTTCCAACAGTATCTTCCCTCTCCCTCCATACCATGACTGAAGAGAGACCAAAGGCCCAAGTGTGTTTTTTAAGaagttatttttagattttccaaACAAAAATAGAGATGTATCCATACTGTTTTCCATAGTTTTTCAGACCTTCAAATTCATTTTGAAACTGTGCATGAACTGTTGAGTCAAAGGAAAGCAAACCTCtaaaattataatgcattaacaaatgtGTGCAGTAATTGAGTCTAAACTCAAACAGATGCAAATAGTTTTGTGATTGTTACAGATAGAAATACTGACTTTGCTGCACACCTCTAATCAGTTCATCAAAACACACCGTCGTATTGGATACCTGGCTGTCTATTCATGATAACATCATGTTCAGGAATCAGGGTGAGGTCAGAAACTCAAGAAACCCAAACAAAGGCTAACATTTAGCGACACAAAATTAGTAGCTGGTAAcagtatacaaatatacacCAGTCAAACAGCCTTTTtagttaataaatgtacacaaattGTGCTTAATGTTATATCTAATACAGTGTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU42969 lncRNA upstream 44078 16474743 ~ 16475333 (+) True G28985
TU42953 lncRNA upstream 54721 16464445 ~ 16464690 (+) True G28969
XR_006250608.1 lncRNA upstream 57885 16457479 ~ 16461526 (+) True LOC122342600
TU43008 lncRNA downstream 69564 16609724 ~ 16610004 (+) True G29011
XR_006250728.1 lncRNA downstream 158361 16698521 ~ 16700218 (+) True LOC122343214
TU43024 lncRNA downstream 208558 16748718 ~ 16752589 (+) True G29026
XR_006250658.1 lncRNA downstream 357355 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA downstream 357355 16897515 ~ 16911342 (+) False LOC122342883
XM_043236529.1 mRNA upstream 62114 16436391 ~ 16457297 (+) True ptprb
XM_043236532.1 mRNA upstream 92225 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA upstream 92225 16400881 ~ 16427186 (+) False LOC122342594
XM_043236542.1 mRNA upstream 120912 16378638 ~ 16398499 (+) False LOC122342597
XM_043236038.1 mRNA downstream 75185 16615345 ~ 16617218 (+) True LOC122342226
XM_043237522.1 mRNA downstream 160883 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA downstream 160883 16701043 ~ 16710156 (+) False chrna2b
XM_043237784.1 mRNA downstream 281953 16822113 ~ 16838424 (+) True rhoj
XM_043237031.1 mRNA downstream 384857 16925017 ~ 16932206 (+) True six4b
TU42966 other upstream 45030 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 533685 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 677556 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 864230 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 963729 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1760255 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1896300 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2343019 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2750060 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 3191102 19731262 ~ 19786128 (+) False G29835

Expression Profile


TU42977 Expression in all Baseline Samples

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TU42977 Expression in each Bioproject

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TU42977 Expression in each Sample
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