RNA id: TU43099


Basic Information

Item Value
RNA id TU43099
length 948
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G29086
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17037273 ~ 17038220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tacatatattactatttttatgattattatttaaatgtatagttaGACAACTTCTTGTGgttttataatgttgttttttgcggtttttttttttttttttttgagcttgaCAAGTGGTTATTATGAATTGTTGACAACAGCATattcattgttaaaaaaaacaaacaaacttgtttatatataaaaaaacctaaaagcaTAAAAGAGCATATAGGTGTGGCATGaggtaaataattacatattattcattctttttaatgttgttaTAATTACTGCTTTAATATTGTTGTGCAACTTTAGAATTACAATAACACCTTTTTGACAGTCACCAAGATATCCAACCTAATCTGTCATTTTTTCAGAGTTATATTTCTGGATTACAGAGCAGAGATTAGCCTGAGGGGAGAGGATTGCACCACTGCCTTTGCGCATCAGTGGTCCGGCTTGCTGCATGTACCCATGAACTACCTACAACAGCACTCTCACCTCTCCCTTGCTTTTCAGATCACGCTGCAAtcttttcttgtcttttgtCATATGCAGAACTCTGTTCGTCATGTAGAACGGATCGACAGTGTACAAAAGTACAGGTTTGGCAGTTGTTCACAATGAGGGACGTTCATAAAGCTCCCATCTCTCAGTAGTGTCAAACAGGGtagaaacaaacatttgacaaTTACTCTTGACTGCTGAATAAGTGCTGGGTCAGACAAAGTGAACAAAAATCCTGCAGATGCAAATCAAATATAGTacattgtataaatattgtCTTATCACATTTTCTGTGTATACGTTTGTTGTCGCCTCTTccacaaaaaagagagaaaagataCTGATACTTTGATATGTGCaacatgtttaattttaattatttgcttcCGTGGACCCCTGTTTTATTGTTATCCTCATGTCTATTGTCAGTGAAATGCCTGCACAATTAAATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43090 lncRNA upstream 95963 16941016 ~ 16941310 (+) True G29078
XR_006250658.1 lncRNA upstream 125931 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA upstream 125931 16897515 ~ 16911342 (+) False LOC122342883
TU43024 lncRNA upstream 284684 16748718 ~ 16752589 (+) True G29026
XR_006250728.1 lncRNA upstream 337055 16698521 ~ 16700218 (+) True LOC122343214
TU43100 lncRNA downstream 234 17038454 ~ 17040830 (+) True atp5mj
TU43101 lncRNA downstream 234 17038454 ~ 17040772 (+) False atp5mj
TU43107 lncRNA downstream 8651 17046871 ~ 17085857 (+) False G29089
TU43104 lncRNA downstream 27057 17065277 ~ 17085857 (+) True G29089
TU43106 lncRNA downstream 27057 17065277 ~ 17085857 (+) False G29089
XM_043237706.1 mRNA upstream 116 17033921 ~ 17037157 (+) True rd3l
XM_043237785.1 mRNA upstream 10935 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA upstream 10935 17016609 ~ 17026338 (+) False rtn1b
XM_043236321.1 mRNA upstream 97586 16937799 ~ 16939687 (+) True six1b
XM_043237031.1 mRNA upstream 105067 16925017 ~ 16932206 (+) True six4b
XM_043236560.1 mRNA downstream 199 17038419 ~ 17040714 (+) False atp5mj
XM_043236555.1 mRNA downstream 2637 17040857 ~ 17083120 (+) False ppp1r13bb
XM_043236554.1 mRNA downstream 3130 17041350 ~ 17083120 (+) True ppp1r13bb
XM_043236553.1 mRNA downstream 3130 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236556.1 mRNA downstream 3130 17041350 ~ 17083120 (+) False ppp1r13bb
TU42966 other upstream 562892 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1051547 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1195418 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1382092 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1481591 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1262195 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1398240 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1844959 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2252000 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2693042 19731262 ~ 19786128 (+) False G29835

Expression Profile