RNA id: TU43101


Basic Information

Item Value
RNA id TU43101
length 429
lncRNA type sense_over
GC content 0.45
exon number 4
gene id atp5mj
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17038419 ~ 17040830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACACTACAGACGTCTTCCGCTGTCTCCTGTCTCTGCCGAGCTAGAGCTGAACAGTGACCTTCTCCGAGCGGTCTAGTGCACTTATATACTAGAGATGGCAGGCGGTGCGTTCGCTGGCTGGTGGACTAAGGTGGCACCTTACTACACCAAAGCATACCAGGAGATGTGGGTTGGTATAGGAATCATGACTATCATGTACTACAAAATTTCATATGGAGGAAAAAAGAAGGCAGTTCAGTCAAAGCCTGCCCACTGATTGGACCACCAGAGCGTCATTCCCCATGTCCTCTCTGTAAATCTTCCCCTGGAAAACCTCCCtgagatttgttttgttttatgtaaacaataaacCGCTTGATTTGGAACACACTATGGACAATTCAGTGCTTTGAAGTCTTTCACTTTGTCttgcatgaaaattaaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43099 lncRNA upstream 234 17037273 ~ 17038220 (+) True G29086
TU43090 lncRNA upstream 97144 16941016 ~ 16941310 (+) True G29078
XR_006250658.1 lncRNA upstream 127112 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA upstream 127112 16897515 ~ 16911342 (+) False LOC122342883
TU43024 lncRNA upstream 285865 16748718 ~ 16752589 (+) True G29026
TU43107 lncRNA downstream 6099 17046871 ~ 17085857 (+) False G29089
TU43104 lncRNA downstream 24505 17065277 ~ 17085857 (+) True G29089
TU43106 lncRNA downstream 24505 17065277 ~ 17085857 (+) False G29089
XR_006250625.1 lncRNA downstream 49767 17090539 ~ 17119106 (+) True LOC122342667
XR_006250626.1 lncRNA downstream 53191 17093963 ~ 17119106 (+) False LOC122342667
XM_043237706.1 mRNA upstream 1297 17033921 ~ 17037157 (+) True rd3l
XM_043237785.1 mRNA upstream 12116 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA upstream 12116 17016609 ~ 17026338 (+) False rtn1b
XM_043236321.1 mRNA upstream 98767 16937799 ~ 16939687 (+) True six1b
XM_043237031.1 mRNA upstream 106248 16925017 ~ 16932206 (+) True six4b
XM_043236555.1 mRNA downstream 85 17040857 ~ 17083120 (+) False ppp1r13bb
XM_043236554.1 mRNA downstream 578 17041350 ~ 17083120 (+) True ppp1r13bb
XM_043236553.1 mRNA downstream 578 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236556.1 mRNA downstream 578 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236552.1 mRNA downstream 11175 17051947 ~ 17083120 (+) False ppp1r13bb
TU42966 other upstream 564073 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1052728 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1196599 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1383273 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1482772 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1259643 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1395688 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1842407 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2249448 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2690490 19731262 ~ 19786128 (+) False G29835

Expression Profile