RNA id: TU43230


Basic Information

Item Value
RNA id TU43230
length 373
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G29178
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17219142 ~ 17219514 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTAGTTTATTTGGGGCTGAgacaataatcataaatgtgaaggcaggcagaaggtcagaTCCAGTACATCAATCCAATCTAGCAAACAATACAGAAGGGCAAGTCCAAAGGTCGTAAAACAGGTAAACAGGCAATGATCATACACAAGATTAGCAAGAGGCAGAGATAAAGGACGCTCTGTAAGGCAGGTAATACTGGCAATATTTAGCATCAAATTCTAGGAGGGCCTCTGGTTATAAAGGcctccaaacaggaaatgaaggcAGAAAAAGCAGAGGGTGAGCCCAGCTAGTACTTGGGTGAGGGCTAGGTATTACAGCTAATATGGTTATACTTGctggttctagtaaggactctatcTGCTGCGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250625.1 lncRNA upstream 100036 17090539 ~ 17119106 (+) True LOC122342667
XR_006250626.1 lncRNA upstream 100036 17093963 ~ 17119106 (+) False LOC122342667
TU43107 lncRNA upstream 133285 17046871 ~ 17085857 (+) False G29089
TU43104 lncRNA upstream 133285 17065277 ~ 17085857 (+) True G29089
TU43106 lncRNA upstream 133285 17065277 ~ 17085857 (+) False G29089
TU43233 lncRNA downstream 743 17220257 ~ 17220616 (+) True G29181
TU43244 lncRNA downstream 74861 17294375 ~ 17294640 (+) True G29192
TU43253 lncRNA downstream 165775 17385289 ~ 17385680 (+) True G29200
TU43359 lncRNA downstream 334319 17553833 ~ 17554190 (+) True G29272
XR_006250563.1 lncRNA downstream 447636 17667150 ~ 17669761 (+) True LOC122342426
XM_043236670.1 mRNA upstream 42645 17122433 ~ 17176497 (+) True brf1b
XM_043236556.1 mRNA upstream 136022 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043237833.1 mRNA downstream 46943 17266457 ~ 17293636 (+) True nudt14
XM_043237097.1 mRNA downstream 88779 17308293 ~ 17348870 (+) False jag2b
XM_043237095.1 mRNA downstream 88780 17308294 ~ 17348870 (+) True jag2b
XM_043237096.1 mRNA downstream 88780 17308294 ~ 17348870 (+) False jag2b
XM_043237874.1 mRNA downstream 177621 17397135 ~ 17410852 (+) True esr2a
TU42966 other upstream 744761 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1233416 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1377287 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1563961 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1663460 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1080901 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1216946 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1663665 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2070706 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2511748 19731262 ~ 19786128 (+) False G29835

Expression Profile