RNA id: TU43359


Basic Information

Item Value
RNA id TU43359
length 358
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G29272
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17553833 ~ 17554190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGACGACACGTGGGAGCCAGGGGTTTCCACATATTAAAAGCAGGCCAAAGAGGAGACAGTGGATGTCTTCCACTTTTTACCGAAATGCAAACATTGAAGGAGATCCCTCACGAAAAGTTCAAGAGAGATTTTATCAGGTTAATGGCTGTGATGGTAAGTTGATGAAGTGGATCAGTCGGTTAAAGGCCAttatctttatttcatttattaattcatatcaACCATCATGGCTTGTGGACATTGTTTCGCTTAAATAGCAAATGAACTATAAAAgggaaattaaaacaatgcatgtggagatagctgttttttttatcatgtggAATTTATCACACAAATATGACAATAAAGATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43253 lncRNA upstream 168153 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 259193 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 333217 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 334319 17219142 ~ 17219514 (+) True G29178
XR_006250625.1 lncRNA upstream 434727 17090539 ~ 17119106 (+) True LOC122342667
XR_006250563.1 lncRNA downstream 112960 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 155865 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 183877 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 191338 17745528 ~ 17746317 (+) True G29306
TU43425 lncRNA downstream 263356 17817546 ~ 17817933 (+) True G29317
XM_043236627.1 mRNA upstream 63538 17483433 ~ 17490295 (+) True LOC122342653
XM_043236626.1 mRNA upstream 63538 17483433 ~ 17490295 (+) False LOC122342653
XM_043236628.1 mRNA upstream 63538 17484898 ~ 17490295 (+) False LOC122342653
XM_043237874.1 mRNA upstream 142981 17397135 ~ 17410852 (+) True esr2a
XM_043237875.1 mRNA upstream 142981 17397135 ~ 17410852 (+) False esr2a
XM_043237592.1 mRNA downstream 11263 17565453 ~ 17578804 (+) True nmu
XM_043237591.1 mRNA downstream 11263 17565453 ~ 17578804 (+) False nmu
XM_043237590.1 mRNA downstream 11263 17565453 ~ 17578804 (+) False nmu
XM_043237593.1 mRNA downstream 11263 17565453 ~ 17578804 (+) False nmu
XM_043236808.1 mRNA downstream 27880 17582070 ~ 17630822 (+) True clocka
TU42966 other upstream 1079452 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1568107 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1711978 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1898652 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1998151 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 746225 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 882270 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1328989 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1736030 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2177072 19731262 ~ 19786128 (+) False G29835

Expression Profile