RNA id: TU43430


Basic Information

Item Value
RNA id TU43430
length 2040
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G29318
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17916054 ~ 17922889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTACTTAAAGTATCTGAAGTAGTTACACCAAACTACAACTCAACAACTCTCTCGTCTCCAAACCTTGTTCCCGTCGCTGTCTCTGACGGCCGTCATCAGCTGGTCTTCGGTGGCGCTCGAGCAGTGCTCACACTTACAGTCGAAGTAATACCTCTTCTTGAGCAGCTGCTGGCGCTCCTTGGAGACGTTGAGGAAGTCCACGTAGCTGATGGTCAGCTCTTCTCCTTCAGAGATCTTCTCCAGAGCCCTCAGCTCGATCCTGCCTCAGGTCACAGACAGTCTCACAAACATTCATCTCCAGGGAACGACTTCAAAAGAGCAAATCAAAGCGGAAACACGAGCCCTGCAGCGAGAATCACTCGAACTCTTTTATGTAATGTTCACTAATCAGGAGCTTTCAGCACGTCACAATAAAGTTCAGTTCCTAGACGCATTAAACTATCATCTGAATGGATGTATTTTTTCacacttatttttataaaaaattcccctcatgtcgttccagaCTTGTTTGACTTTATTCCCAGAGGAACCAGGGTTATCAtcgttaactaaaactaaaaaagctctttttgtcaaaacaaaaccaacgaataaacaaaataaataaataaatatatgtagagtttgtttgcaaaaactttttaaagtgttcagaaatagtgttttttaatacgttaacatgtttttattgtgcgaggtaactgtatttttttattttgtaacctAATCCACGATTAaatgagattaattggaatgcttaatgaaaaaaatgagctttttataaattgtttttgcaaaaaccTATATCTACATttatacttacatttatttatatatatatgcattataacaCGCATTATAGTTTGTCAGCAGAAACtttgacaaacacacaaaagataCTAAATTACTACAAcctgaattaaaatgaagagacaatttaaataatatctaatttatgatatatatatataaataacacaaaaaattagtttttcatgCCATGAAAGTAATCGAGGGCTATCAAGCTCCAAAAACGTTCTGTCTTTTTTGAAGCATTCAGGGTTGACGTTCACGAGGAACAGAGAAAGAACGTCATGCCGGTCTGAAACGCTGTGTGCACTGCTAAGGGCGGGACTCACCTCCTCGTGGAGTGCAGCGAGGCGTCCAGAGCCGTCTGACTGCGGGAGAGAAACACTTGAGACTCAACACTCACTCCAGCGTCTGTGGGATTTCTCAGAGATGCACTCACTTGCCAGGGTTGAGGATGACGGTGCAGTTAGGCCAGCAGTCGTGGTTGACCAGACACAGGTTAGGGAAGAGCCCCACGCCCACGGCCTGCAGACCCCTCTGGTCACTCAGCGTGAAGCCATTGCAGTTGATCTGAGGACGAGACGGAAGGATTACAAAGACGACAGACGGCTCCGATTTCTCACGCAGACCCTAGAGACGAGGAATCAGCGCCCACCACGCCGAGGAGATGCGCCACGTAGTCCTCTCCCACGGGTTTGCTCTTTTTAGGCCAGTAGTTGTAGAAGTTCTGCACATCCACTTTGAGCTCTTTCAGGTCTTCGGGGGACGTTTTGGACAGGTGATCCTCCAGGAGGTCAAGGGTCGTGAGCTGAGCGTCAGAGACCAGGCCCGTGTCCTTCTGAATACGCCACAGGATCCGAGCCACCAGGCCACGTTCTCATTGGGCGCTGTCCCTGTCTTCCTGATGGCGGAGCACTCCTGCTTGTGTTCGTCCCAGGCGGCGCGCTGACACGTACGATCACAATAGTGTGCGAACTTACACTGAGCACAGCGGTGAGGGGTCACCTGACGCCGGAAACAGCTGTGACACACCTGCAGAGAGaggctgacacacacacacacacacacacacacacacacacacacacaccttcagtAGCATCCTTTTTTCCAGAGAACACACTTATTTTCATACCAGTGCTGTTCAGTGAACACTGATTGTATTTAAGGCAGGTTTCCTGAAAATGAGTGAACACTTCAAAGGTTTGGGAttagtatgatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43427 lncRNA upstream 1099 17916054 ~ 17919610 (+) True G29318
TU43454 lncRNA upstream 65345 17854461 ~ 17855364 (+) True G29329
TU43463 lncRNA upstream 96444 17823898 ~ 17824265 (+) False G29334
TU43465 lncRNA upstream 96938 17823393 ~ 17823771 (+) False G29334
TU43464 lncRNA upstream 96969 17823250 ~ 17823740 (+) True G29334
TU43518 lncRNA downstream 8995 17931884 ~ 17932404 (+) True G29364
TU43659 lncRNA downstream 76708 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA downstream 76708 17999597 ~ 18001240 (+) False G29476
TU43674 lncRNA downstream 136446 18059335 ~ 18060916 (+) True G29484
TU43755 lncRNA downstream 512754 18435643 ~ 18460595 (+) True G29544
XM_043237498.1 mRNA upstream 5115 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA upstream 5274 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA upstream 5274 17912441 ~ 17915435 (+) False fabp1a
XM_043237493.1 mRNA upstream 17792 17901441 ~ 17902917 (+) True oxt
XM_043237278.1 mRNA upstream 109246 17805840 ~ 17811463 (+) True LOC122343009
XM_043237406.1 mRNA downstream 10416 17933305 ~ 17937916 (+) True exosc2
XM_043237407.1 mRNA downstream 10479 17933368 ~ 17937916 (+) False exosc2
XM_043237201.1 mRNA downstream 16795 17939684 ~ 17963519 (+) True abl1
XM_043237202.1 mRNA downstream 24949 17947838 ~ 17963519 (+) False abl1
XM_043237237.1 mRNA downstream 62104 17984993 ~ 17997658 (+) True ddx54
TU42966 other upstream 1446328 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1934983 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2078854 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2265528 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2365027 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 377526 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 513571 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 960290 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1367331 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1808373 19731262 ~ 19786128 (+) False G29835

Expression Profile