RNA id: TU43440


Basic Information

Item Value
RNA id TU43440
length 2227
lncRNA type read_through
GC content 0.44
exon number 2
gene id G29320
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17884328 ~ 17965751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatatatatatatatatatatatatttttttttttttttttttttttttCGCTTTCCTGTGATAGAGcatttttattgtcatcattaaaatcaaaatgtcaacattttaaaatcacatacaCGCATAAACAGATTTTTCAAACGTTAGCACAGCTCCTTCAAAGTTTATACATATGTACTGCTTTTTACTCGCGAGAAGAGGTCGTTCAAACAGTTCAGAAGGACTAGATCAGTCGAGATCTGAGCTCCATCTTTAAGACTTTCTGTAGAATCTGCCTGGCGTCTCTTCGGGCGGAGAGTTTATGAGCGAGGCGTCAGGGCTGTGTTTCATCACCAACAGATACAGCCTTATGTACAGCAGCTGAATCGGATCCCATTTCATATGGTACGTACACTGAGTTAAGACACAGATGCTGCTTCAGAAGAAGCTGTGCGTGATGCTGTTAATATACAAGCCGATGCTCTGATGATTACTGTACAGCCTACACGTCTGGAGCCGTTTCACAGATCAAAACAGTAGCGGTGTTGTAAAACCGTTTGTTGAACTCAAGTTCGAACTGCATGTTGAGCTAGTCGAGATTAAAGAGTGATGGTAATAATATTAAGATGAATGAGTAACAATAAGGCAACACAAAAAAGCGGTGGAGAGGACAGATGAATGGATACTGATATGACGAAGGGGCAAGAATCAGTCTTTCCATAAAGTGTCTTTGATTCATAAAGCTGTCTGAACCAAGCGGACCCTCGCATGTCGACATGCACGTGATTGCGAGCTCGCAACAAGAGACTTTCATTCGGTTTTAAATCTGGGATCAGTGCAACCGCTGTACGTTTACAGATGCATGAATGCAATGCATTATTCCGAGCACCTCCACCTCGCGCCCCTCAGCAGCAGGAGGCGTCTGACCGGAACAGAGCGGTCCTCCTGCCTTGAACGCTTCACAAACTTGAACTTTGGTTCTCAAACGGGTGGAAAAAACGGCAGCAGAAACGCATTCAATATAATCCTGATGCAACCAGGGTCTGTCGAGCTGTAAAATGCGTCAATAAAAAGAAGCTGAACTGAAGTGTGACGTGATGGGAAATGGTTAGTGCGGTCAGAGGATGAAGGGAACGTAAGAACACACCGACCAGAGAGAGTGAGGACGGACAGATGACGAGAGAGAAGGGAATGAGCGCATGTAGCTGTGATCCTCCCCTCTCTGGGACGGCCGAGTGtgtgatgaggaggaggaggaggaggatgaaggtCATTAACAGCCACACCCTTCTCTCTGCGGCTGTGGTTCGCTGGTGAGCCGCCCGCCCTGCGGCGCCGAGGGTTTGTGCTGTACGCCCGACTCGGCCGCGTTCAGGTCCAGACTGCCATCTTGGATGTTCTGATAGATCTTCTTAGCTGCTTCCAGAAACGCGTCTTCCACGTTCTCTCCTCTGTGAGCACAAACACACGTCAGCATACTCTCACCTGAGATTCAcatctaaaaaaatctaaacccaAACTGAACTCATGAGAAAACGCAGTCAAACCGTCATTTATTCAGACAGCTTCAAGATTCGAAAAATGGTGCTAAACTGTGATAAAACAAACTCGATAATGTGAGATAAGAAAGAAAGGTATGTAATGAATTGAATATCAAACAATGCCTCGGTTTGTTCAGTCTGTGGTGGAAAAAGATTGCatcaaaacaacatcaaaacatAATATCTGGTGtctgaaatatttctgaaagtgatttaaaaaaacaggctAACTGATTCAACTACTAAAGCATGCTAAACACGCTGAGAATATTGAAATGATGTGCTAAAGCGTTATATATCTCAGGTTCAGGTTGGTGGTCACTGCAGAGTTCATCGCCGTCTGAGAGACTCTTGACCTCGAGAGGTGAATAAATCAGCATCCAAACCCATGAGTTTTATCGCTGATTCTTACAGACGTCGTTCTGAGGAGCGGTTTCTGCTAGCGTTGGCTCTATGGATATTCTACTCCATAATTCTACCCTTTTCTTCATAAATGACTGTGACGTCACTCACGTTTTAGCGCTGGCCTCCAGGAACAGCAGACCTGAGAACACAAACGGATCAGGTCAGGGTCATGTGACTCGTCATGTGACCGTCAGACGCGTCTCTCACCGTTCTCTTCGGCGAACTGCTTGGCTTCTTCATACGTGACGTCTCTCTGCGCTTCCAGATCCGCTTTGTTTCCTATGAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43454 lncRNA upstream 28964 17854461 ~ 17855364 (+) True G29329
TU43463 lncRNA upstream 60063 17823898 ~ 17824265 (+) False G29334
TU43465 lncRNA upstream 60557 17823393 ~ 17823771 (+) False G29334
TU43464 lncRNA upstream 60588 17823250 ~ 17823740 (+) True G29334
TU43468 lncRNA upstream 60588 17823393 ~ 17823740 (+) False G29334
TU43659 lncRNA downstream 33846 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA downstream 33846 17999597 ~ 18001240 (+) False G29476
TU43674 lncRNA downstream 93584 18059335 ~ 18060916 (+) True G29484
TU43755 lncRNA downstream 469892 18435643 ~ 18460595 (+) True G29544
TU43761 lncRNA downstream 475880 18441631 ~ 18465837 (+) True G29548
XM_043237278.1 mRNA upstream 72865 17805840 ~ 17811463 (+) True LOC122343009
XM_043236807.1 mRNA upstream 218431 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 253506 17582070 ~ 17630822 (+) True clocka
XM_043237237.1 mRNA downstream 19242 17984993 ~ 17997658 (+) True ddx54
XM_043237386.1 mRNA downstream 236984 18202735 ~ 18210893 (+) True lman2la
XM_043237485.1 mRNA downstream 252965 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA downstream 252965 18218716 ~ 18221257 (+) False LOC122343129
XM_043237471.1 mRNA downstream 581780 18547531 ~ 18554389 (+) True rab21
TU42966 other upstream 1409947 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1898602 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2042473 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2229147 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2328646 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 334664 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 470709 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 917428 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1324469 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1765511 19731262 ~ 19786128 (+) False G29835

Expression Profile